Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c14
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    31   0.85 
08_01_0205 - 1642769-1642783,1642923-1643555,1643656-1643737,164...    29   2.6  
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671     28   6.0  
04_04_0402 + 24948451-24948559,24948862-24949115                       27   8.0  

>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 227 GSCHNTVKYMVDIYGASVLILRTP 298
           G CHN VK +  IYG + L+L  P
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAP 569


>08_01_0205 -
           1642769-1642783,1642923-1643555,1643656-1643737,
           1644474-1644514
          Length = 256

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 340 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 182
           +C+  A QL GK+   S  ++  SV + + F ++ TR    +D   M + +GE
Sbjct: 196 ICSGIAAQLFGKKNELSNQESVASVTIPYSFPKLWTRVE--IDDAMMCKINGE 246


>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
          Length = 340

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 442 IAVTFIVSQARTATNIRRAGKNSSSKRHVDEQRQPNKSQ 558
           + VT  VS       +RRAGK++       +Q+QPN  Q
Sbjct: 50  VTVTGKVSADTLVRKLRRAGKHAEQWPEEQQQQQPNGGQ 88


>04_04_0402 + 24948451-24948559,24948862-24949115
          Length = 120

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 185 TIPSKHRKMINDAGGSCHNTVKYMVDIYG 271
           T    H K+IND    C + + Y +  YG
Sbjct: 72  TFACPHNKLINDVNNGCADEMFYTIHTYG 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,103,101
Number of Sequences: 37544
Number of extensions: 247114
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)