Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c14
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 509 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 417
           E+  AR IFVAV+A   MN+TA+ T  ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214


>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 119 IDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLIL-RT 295
           ID   I+Q+  + L  F  ++ T+  K  KM+N  G   +  V  ++ +Y  S   L R 
Sbjct: 183 IDKKIIFQHTILKLTYFCGVMRTVNEKRSKMMNPGGQEIYPDV--ILQLYEKSKSTLHRI 240

Query: 296 PCSFADQLLSTFIANNYLC 352
            C   D+LL   + +   C
Sbjct: 241 CCQPLDKLLEWEVTDEEYC 259


>U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical
           protein F25F8.1 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = -3

Query: 340 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKRL 161
           V   C Q L G+ +RRS+  + + V V  +  ++       +  +   R + +++L+ RL
Sbjct: 67  VLRSCVQSLEGRCSRRSEVAHQQKVAVKQLVAKIEVILLNELSGYVERRNEPDRRLISRL 126

Query: 160 QRHF*ILINVIRVDPK 113
            R    LIN+   D +
Sbjct: 127 NRE---LINIDSKDDR 139


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -3

Query: 373 SATTVKVAQII-VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMF 197
           S TT  +   + +C+ C   L+        N N R +   H+FDRV  RS R+V    +F
Sbjct: 303 SVTTFSICHCLAMCSACLNPLI----YAFFNHNFR-IEFMHLFDRVGLRSLRVV----IF 353

Query: 196 RWDGEQKLLKRLQR 155
              GEQ+ LK+  R
Sbjct: 354 ---GEQESLKKSMR 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,649,214
Number of Sequences: 27780
Number of extensions: 229489
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)