Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27c12
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 213 1e-56
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 213 1e-56
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.2
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 2.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 2.2
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.2
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 2.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 2.9
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 3.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 5.0
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 6.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 8.7
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 213 bits (521), Expect = 1e-56
Identities = 93/147 (63%), Positives = 121/147 (82%)
Frame = +1
Query: 70 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 249
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 250 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 429
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 430 DLGTQLRTDFDSGKELLCTVLKSCGEE 510
+LG ++ FD G++L+ TV+ + GEE
Sbjct: 120 ELGNEIEEGFDEGRDLIITVVSAMGEE 146
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 213 bits (520), Expect = 1e-56
Identities = 93/147 (63%), Positives = 121/147 (82%)
Frame = +1
Query: 70 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 249
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 250 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 429
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 430 DLGTQLRTDFDSGKELLCTVLKSCGEE 510
+LG ++ F+ GK+L+ TV+ + GEE
Sbjct: 120 ELGNEIEEGFEEGKDLIITVVSAMGEE 146
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 307 NMDVPHVKREDYQLTDISDDGYL 375
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 130 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 282
P +CS ++ ++ C V G+ H H++G+D+ NG Y
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 223 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 342
K A L+ D F+G ++ IC S N+ + V ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 214 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 339
K G+H A +++ + N K +D CPST D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 162 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 257
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 406 HAGHRCQPSGSGSHHPRYQSVGSLRASRGVRP 311
H G P+ PR + GS A+RG RP
Sbjct: 957 HVGTGLPPTSKSKPFPRLATGGSTAAARGPRP 988
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/76 (22%), Positives = 32/76 (42%)
Frame = +2
Query: 8 SVEEPVGHISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH 187
S E+P+ +S L+ TS + P P P PP+ + P + + ++ +
Sbjct: 222 STEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTV--KTTT 279
Query: 188 ARLLKCPHPKPESTAT 235
+ + P P S +T
Sbjct: 280 SNASRQPSPLVSSKST 295
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 325 VKREDYQLTDISDDGYL 375
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 306 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 217
+CG T +FI E+I+P V VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 442 QLRTDFDSGKELLCTVLKSCG 504
QL+ F E LCT+L SCG
Sbjct: 522 QLQNGFIPTCERLCTILLSCG 542
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 145 ALRKNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGID 261
AL + + ++KGRPC+I+ K G V + +D
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLD 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,587
Number of Sequences: 5004
Number of extensions: 49512
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -