Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c01
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +2

Query: 86  ISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAAL 202
           +S PST      C+  +   S C      Y +  T + L
Sbjct: 343 VSYPSTETLNTKCNTLERTPSKCSQTSVHYSNGQTHSQL 381


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 364 TRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLYVNAKSITTSKLI 510
           T +SRL+    G + N      +ST+   +  S+K +    S+TTSK++
Sbjct: 233 TDNSRLEP---GTNKNGKFFSRSSTSRIVISESLKHFTIQSSVTTSKMM 278


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 63  NQHLNRKLYFCIIN 22
           N + N+KLY+ IIN
Sbjct: 105 NNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 63  NQHLNRKLYFCIIN 22
           N + N+KLY+ IIN
Sbjct: 105 NNNYNKKLYYNIIN 118


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 63  NQHLNRKLYFCIIN 22
           N + N+KLY+ IIN
Sbjct: 325 NNNYNKKLYYNIIN 338


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 152 TSWYITWRGSSS 117
           T+WY+ W+G  S
Sbjct: 672 TNWYMGWKGMLS 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,280
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)