Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b24
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   1.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   1.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   2.3  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   4.1  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   4.1  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   5.4  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   5.4  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   5.4  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   7.2  
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    24   9.5  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    24   9.5  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 346 FRIIRLHYDEKQGCLFAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKH 203
           FR I + YDE+      FCN  +E     F     ++LYS  +C D H
Sbjct: 125 FREI-VSYDER--VYRFFCNLGMELPESFFISNTSIDLYSLMRCIDSH 169


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 14  KRRLHVYAINVVKKLVQTGRVVRWRCFVSFVFNHV 118
           KR      ++++KK+V     +R  C +S+++NH+
Sbjct: 463 KRMASYIKLSILKKMVVYAMDLRGECMLSWLYNHL 497


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = -1

Query: 229 SYKQCYDKHIFPSCRNKCISYTTFVAPGVEGNCLNKINVIKYERNKAAPSDNAACLDKFL 50
           SY  C D HIFP   +   +   F   G      + +++I+   ++    D    + + L
Sbjct: 516 SYDLCIDSHIFPLYSDTWCAVMDFCPRG------DLLSLIEDRHDRLGKKDFECMIKQIL 569

Query: 49  HNVNRVHMQ 23
             +N +H Q
Sbjct: 570 RGLNYIHSQ 578


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 126 FKQFPSTPGATNVV*LMHLLRQDGNMCLS 212
           FK +PSTP   +   L H    D N  LS
Sbjct: 77  FKTYPSTPAVPSKSVLFHFYEPDENFSLS 105


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 414 MNSKRALQNMQNQENSVLLQPIRFVSFVCITMKNKAA 304
           ++ ++ L  + N    +LL+ +  + F+C+TMK   A
Sbjct: 142 ISKEKHLVYILNSFKPILLKLVSIIRFLCLTMKGHCA 178


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 4   HLPQTAFACVRD*RCEETCPNRPRCPMALLCFFRI*SRLSCLNNFLPRP 150
           HL Q   A +++    +    +PR P  L C F   S+L+ +NN    P
Sbjct: 214 HLTQPKRALLKESNTGDKDIFKPRYPQLLSCRFTTLSKLAPINNSKSAP 262


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 92  FVSFVFNHVYLV*TISFHARRHKRGVTDALVAARRKYVLVVALFVRIQI*FY 247
           F++ VF H Y   TI  H R H    T+A ++A    VL   L   I + F+
Sbjct: 181 FLANVFFHEYTTETIRPHVRLHNSLSTNAALSA--SVVLASRLEKSINVFFF 230


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 64  LDKFLHNVNRVHMQTPFV 11
           LD F HNV  V   TPFV
Sbjct: 225 LDVFAHNVETVEELTPFV 242


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 271 RVLQFYFKVKLNLYSYKQCY 212
           R LQFY     NL S+K CY
Sbjct: 3   RSLQFYRLSSKNLLSFKTCY 22


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 121 INVIKYERNKAAPSDNAACLDK 56
           I+V++Y RNK   S    C+DK
Sbjct: 97  ISVLEYRRNKNPTSTAHICIDK 118


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 163  WCN*CTCCGKTEICACRSIVCKNTNL 240
            W + C  CG + +C+    + K+TN+
Sbjct: 2568 WRSQCRACGNSNVCSDCVSMLKDTNI 2593


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 82  SDNAACLDKFLHNVNRV 32
           SDN  C+ +F H+ NR+
Sbjct: 579 SDNPTCIVEFFHSTNRL 595


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 210 TSTYFRLAATSASVTPRLWRRAWKEIV 130
           TST   L A S  +TPR+     KEI+
Sbjct: 37  TSTILELGAGSGKLTPRIIASQPKEII 63


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 178 TCCGKTEICACRSIVCKNT 234
           T C KT+   C S  CKNT
Sbjct: 396 THCCKTDTGCCSSSCCKNT 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,656
Number of Sequences: 5004
Number of extensions: 39925
Number of successful extensions: 98
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)