Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b24
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1118 - 10316298-10316710,10316789-10317264,10317397-103177...    29   1.3  
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    29   1.3  
04_04_1526 - 34163154-34163288,34163751-34163815,34164444-341645...    27   5.3  
10_08_1016 - 22262760-22264331                                         27   7.1  
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741...    27   9.3  

>07_01_1118 -
           10316298-10316710,10316789-10317264,10317397-10317735,
           10317798-10317895,10319007-10319045
          Length = 454

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 281 YRKTSPAVLL*SKTKFVFLQTMLRQAHISVLPQQVHQLHHV 159
           +R +    LL   ++F  L+ +  Q +I+ LP Q+++LHH+
Sbjct: 292 FRPSGHRRLLDKLSEFTLLRVLDLQDYITELPSQINKLHHL 332


>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 371 IQYYFSRYVSYHSFALR*KTRLLVCIL*YKY 279
           +QYYFS Y  Y+ +  R    + +C+  Y Y
Sbjct: 113 LQYYFSYYYQYYIWRRRLLVAIAICVASYSY 143


>04_04_1526 -
           34163154-34163288,34163751-34163815,34164444-34164516,
           34164593-34164721
          Length = 133

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 192 LAATSASVTPRLWRRAWKEIV*TR*T*LNTKETKQRHRTTRPVWTSFFTTLIAY 31
           L +  A   P L RRA       R T  +TKE  + HR    V TS  + L A+
Sbjct: 13  LLSRQALSLPNLRRRASNSWAAVRDTFFSTKEVFESHRVVFTVGTSIASVLTAW 66


>10_08_1016 - 22262760-22264331
          Length = 523

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 244 KLNLYSYKQCYDKHIFPSCRNKCISYTTFVAPGVEG 137
           K N+Y+YK  +   I P CR   I+ +  V+  + G
Sbjct: 244 KSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGG 279


>02_02_0440 -
           10273032-10273259,10273423-10273461,10273875-10274123,
           10274203-10274329,10275009-10275251,10275359-10275457,
           10275566-10275681,10275813-10276039,10276164-10276276,
           10276402-10276522,10276641-10276855,10277042-10277225,
           10277739-10278048,10278155-10278249,10278473-10278485
          Length = 792

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/94 (19%), Positives = 38/94 (40%)
 Frame = -1

Query: 445 AYLKMKIYSYNELKTRFAEYAKPGEFSITSADTFRIIRLHYDEKQGCLFAFCNTNIEKRV 266
           A+  ++++ YN   + F  + K GEF      + + +   Y+  +    +F   +I +R 
Sbjct: 337 AFRLLRLHGYNVSPSVFKNFEKDGEFFCFVGQSTQAVTGMYNLNRASQISFPGEDILQRA 396

Query: 265 LQFYFKVKLNLYSYKQCYDKHIFPSCRNKCISYT 164
             F ++      +    +DK I        + YT
Sbjct: 397 RNFSYEFLREREAQGTLHDKWIISKDLPGEVQYT 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,356
Number of Sequences: 37544
Number of extensions: 238829
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)