Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27b24
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of ... 30 0.69
AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of ... 30 0.69
AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of ... 30 0.69
U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical p... 29 2.1
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z54237-8|CAE52902.1| 771|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical p... 29 2.1
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 29 2.1
Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical p... 29 2.1
Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 28 2.8
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 28 2.8
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 28 3.7
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine re... 27 4.8
Z98860-1|CAB11544.1| 677|Caenorhabditis elegans Hypothetical pr... 27 6.4
>AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform b protein.
Length = 218
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 374 SWFCIFCKARFEFIVRIYFHF*ICSD 451
SW+C +CK RF+ V Y H + SD
Sbjct: 163 SWYCDYCKIRFDDKVMWYLHSGLHSD 188
>AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform c protein.
Length = 175
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 374 SWFCIFCKARFEFIVRIYFHF*ICSD 451
SW+C +CK RF+ V Y H + SD
Sbjct: 120 SWYCDYCKIRFDDKVMWYLHSGLHSD 145
>AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform a protein.
Length = 262
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 374 SWFCIFCKARFEFIVRIYFHF*ICSD 451
SW+C +CK RF+ V Y H + SD
Sbjct: 207 SWYCDYCKIRFDDKVMWYLHSGLHSD 232
>U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical
protein C55F2.2 protein.
Length = 159
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 322 DEKQGCLFAFCNTNIEKRVLQFYFKVKLNLYSYKQCY 212
D+ GC+ C+ + R+ YF+ LN+Y ++QCY
Sbjct: 37 DQDSGCVPLGCSVDQFDRIGCGYFR--LNIYQFQQCY 71
>Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 535 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 575
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical protein
T11B7.4d protein.
Length = 1424
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 1275 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 1315
>Z54237-8|CAE52902.1| 771|Caenorhabditis elegans Hypothetical
protein T11B7.4c protein.
Length = 771
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 622 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 662
>Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 496 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 536
>Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 535 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 575
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 1275 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 1315
>Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical
protein T11B7.4c protein.
Length = 771
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 622 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 662
>Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 301 FAFCNTNIEKRVLQFYFKVKLNLYSYKQCYDKHIFPSCRNKC 176
F N++ +R+L+ F + + C+++HI P C NKC
Sbjct: 496 FVCANSSCRRRLLECGFVEEDGQKFCESCFEQHIAPRC-NKC 536
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 212 RQAHISVLPQQVHQLHHVC 156
R H S+LP+Q+H ++ VC
Sbjct: 304 RVGHFSILPEQIHAINPVC 322
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 212 RQAHISVLPQQVHQLHHVC 156
R H S+LP+Q+H ++ VC
Sbjct: 304 RVGHFSILPEQIHAINPVC 322
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = -2
Query: 318 KNKAACLHFV----IQISKNESCSFTLK 247
K CLHF I+ISK SCS TLK
Sbjct: 44 KRDLLCLHFFESFFIRISKRTSCSITLK 71
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = -2
Query: 318 KNKAACLHFV----IQISKNESCSFTLK 247
K CLHF I+ISK SCS TLK
Sbjct: 44 KRDLLCLHFFESFFIRISKRTSCSITLK 71
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = -2
Query: 318 KNKAACLHFV----IQISKNESCSFTLK 247
K CLHF I+ISK SCS TLK
Sbjct: 44 KRDLLCLHFFESFFIRISKRTSCSITLK 71
>AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein21 protein.
Length = 330
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 259 FYFKVKLNLYSYKQCYDKHI--FPSCRNKCISYTTFVAPGVEGNCLNKINVI 110
FYF+ K +L SYK Y + F +C + F+ P V NK I
Sbjct: 112 FYFRYKASLVSYKDHYFTYFLRFLVYSTRCFAIFDFIFPIVTYQDANKFQQI 163
>Z98860-1|CAB11544.1| 677|Caenorhabditis elegans Hypothetical
protein Y26G10.1 protein.
Length = 677
Score = 27.1 bits (57), Expect = 6.4
Identities = 23/87 (26%), Positives = 35/87 (40%)
Frame = +2
Query: 5 TFHKRRLHVYAINVVKKLVQTGRVVRWRCFVSFVFNHVYLV*TISFHARRHKRGVTDALV 184
T RR+++ I V +++ R F F F + + FH RR + V
Sbjct: 591 TSELRRIYIRRIGFVDTGYPGYQMLINRIFYIFPFGSIICYIVLYFHVRRMTQQVLSRRT 650
Query: 185 AARRKYVLVVALFVRIQI*FYFKVKLQ 265
+ K + V LF+ I FY K Q
Sbjct: 651 SENGKQRVFVQLFITIL--FYGKPNCQ 675
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,724
Number of Sequences: 27780
Number of extensions: 239518
Number of successful extensions: 616
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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