Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b24
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   0.67 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.89 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   STFHKRRLHVYAINVVKKLVQT 67
           +T H R + + AI VV+KLV T
Sbjct: 481 ATEHDRSVMIQAIRVVQKLVNT 502


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 105 TKETKQRHRTTRPVWTSFFTTLIAY 31
           TKE+  RH      W SFF  +  Y
Sbjct: 396 TKESAWRHFAAIIEWLSFFIVIFTY 420


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 145 RPAPQTWCN*CTCCGKTEIC 204
           R   +T+ N C  C K E+C
Sbjct: 209 RRLKETYSNMCALCEKPEVC 228


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 145 RPAPQTWCN*CTCCGKTEIC 204
           R   +T+ N C  C K E+C
Sbjct: 209 RRLKETYSNMCALCEKPEVC 228


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 145 RPAPQTWCN*CTCCGKTEIC 204
           R   +T+ N C  C K E+C
Sbjct: 209 RRLKETYSNMCALCEKPEVC 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,986
Number of Sequences: 438
Number of extensions: 2726
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)