Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b20
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.63 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   3.4  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    26   4.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.9  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   5.9  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    25   5.9  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 384  ICYFKKKRFIYLELRLPRRAPESNSKAWTFSVGF-RSLEDPEQRHRSIWIE 235
            +  F+ KRFI     +    P  ++K +  S GF +S+ED     +  WI+
Sbjct: 997  VILFRLKRFIMSSEEINLDIPNLSTKQFVLSSGFKKSIEDSYTMKKRFWIK 1047


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 374 LKKNDLFTWNCAYHDERLNRIQKLGLSA*ALGV 276
           L+   LFTW C  + E  N +    + A +LG+
Sbjct: 523 LEVQHLFTWTCELYSENFNTVISSFIIANSLGI 555


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 450 TKNIKSMSCLCITNAVNAAIV 512
           T  +K++ C CITN V+ AI+
Sbjct: 664 TNYLKNLLCCCITNLVSLAIL 684


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 410 FFDYVIKCNHWEDYEKYKKYE 472
           FF Y+ KCN W+   + K YE
Sbjct: 146 FFSYLRKCNMWDLKLQAKAYE 166


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 117 ETNTRVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 248
           E N ++ S   Q + + ESF     L    T+++  +S +QSIL
Sbjct: 371 ENNIQISSEYLQQHLIGESFDGNISLEPNSTEWDDDVSALQSIL 414


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 324 PESNSKAWTFSVGFRSLEDPEQRHRSIWIESL-RF*C*NRSIERANRPKAGT 172
           PE+NS +WT      S   P+ +  SI++E L +    N SI R   P   T
Sbjct: 332 PENNSFSWTHPKKNSSSPLPQSQSSSIFVEHLNQLYEANASIHRPVNPAFST 383


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 60  LFTIMSKPNV---LTRILDAIAETNTRVDSVQTQLNGLEESFQPLDGLPAQLTDFNT 221
           LF I++K N+          I   + +   + +Q   L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,101
Number of Sequences: 5004
Number of extensions: 37520
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)