Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27b19
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.62
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 29 0.82
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 27 2.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.3
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 26 4.4
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 26 4.4
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 5.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.8
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 7.6
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 7.6
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 29.1 bits (62), Expect = 0.62
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +3
Query: 108 PIKKMRKRKSLKLNEEDSDGSGQ----GAEPEEF-QDSGEDWTPDADSNEPASRTSRKRV 272
P KK LNE+ S + + EEF +DS + D+NEP+++ + K V
Sbjct: 210 PKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTV 269
Query: 273 SKPPVN 290
+ VN
Sbjct: 270 PEDVVN 275
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.82
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 45 SPKVKSD*RGSVSLSYFSRTIPIKKMRKRKSLKLNE-EDSDGSGQGAEPEEFQDSGEDWT 221
SPK K + S S S + + + K+K LNE ED D +G G E D E
Sbjct: 36 SPKKKKNTTSSGS----SESDSMSQNDKKKDSSLNESEDEDFAGFGESASE-NDELESAE 90
Query: 222 PDADSNEPASRTSRKRVSKPPVNNTKKKRK 311
+A+++E +S S+K SK KK +K
Sbjct: 91 SEAENDEESS--SQKSNSKESHAQRKKLQK 118
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 565 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGML 660
L+ +H Y NLSQ +E+F + GG L
Sbjct: 24 LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFL 55
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 138 LKLNEEDSDGSGQGAEPEE---FQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKKKR 308
L L+EE+S+ S + + ++ +D G + D D +K+ SK + KK R
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDR 195
Query: 309 K 311
K
Sbjct: 196 K 196
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 150 EEDSDGSGQGAEPEEFQDSGE-DWTPDAD 233
EE+ D G+G E EE +D G+ D D D
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 528 VISKLDELNLWKIDGKALLQKFIPMESN 611
V S+L EL++WK K + P+ESN
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESN 259
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 144 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 251
++ +D D S Q A EE+ D +D D D NE ++
Sbjct: 228 IDGQDDDSSEQTAAFEEYDDDDDD---DVDDNEQSN 260
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 576 LCHQFSTSSVHQVLILQYL 520
LCHQ S+S +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 144 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVN 290
+N ED+ + F + G + A+SN+ S SRKR + P N
Sbjct: 57 VNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGS--SRKRKNLPNEN 103
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 147 NEEDSDGSGQGAEPEEFQDSGEDWTPDADS 236
N D +GS + + EE GE TP+ D+
Sbjct: 91 NGVDGEGSDESSSEEEEDSDGELVTPEVDA 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,063
Number of Sequences: 5004
Number of extensions: 53225
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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