Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b17
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    28   1.3  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   5.3  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   7.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.1  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    25   7.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   9.3  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 273 LNNLFASYTLNRTDVMELYNIKYAIDPTNKIVIEQ 377
           L  +F   T +  D M  YN K + DPT+ ++ ++
Sbjct: 76  LYGMFLEATASEKDAMSYYNSKLSEDPTHTVIYKR 110


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 321 ELYNIKYAIDPTNKIVIEQV 380
           +LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 327 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 419
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 102 SLVFQN*TGFTSRILRVKHNQNM-MSFVIKIKLMSCFAH 215
           SLVFQN  G T+ +    H   + + +++ +K    F+H
Sbjct: 474 SLVFQNELGLTNTVWEAAHGGMLGIKYLVAVKYPLFFSH 512


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 327 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 419
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
 Frame = +3

Query: 348  DPTNKIVIEQVDNVDAFVHIL--EPGQEVFDETLSRYHQF-------PGVVSSII--FTQ 494
            D  +K++I+   ++   V I+  E      D T+  YH F       P  + ++   FTQ
Sbjct: 784  DIIDKVLIDMCSSIQNSVVIINEESFMNNIDITVELYHFFSIILQKHPSFLETMYPDFTQ 843

Query: 495  LVLNTIISVLSEDGSLL 545
            L+LN  I++L +   LL
Sbjct: 844  LILNRAINLLGKPERLL 860


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 173 VICYKNKIDVMFCTRLITNSLYE*NSTR 256
           +ICY+N  +V F  R++ N   E N+ +
Sbjct: 24  LICYRNVTNVYFSLRILLNRQNEGNNCK 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,384
Number of Sequences: 5004
Number of extensions: 49704
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)