Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b16
         (538 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001321-1|AAN71076.1| 1023|Drosophila melanogaster AT15860p pro...    28   9.3  
AY089344-1|AAL90082.1|  922|Drosophila melanogaster AT16542p pro...    28   9.3  
AE014296-2480|AAF49661.2|  922|Drosophila melanogaster CG13457-P...    28   9.3  
AE014296-2479|AAN11789.1| 1023|Drosophila melanogaster CG13457-P...    28   9.3  

>BT001321-1|AAN71076.1| 1023|Drosophila melanogaster AT15860p
           protein.
          Length = 1023

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 414 VDKCIKMKRVKCNKVRTVTEIV-NSDEKIQKTYELAE 521
           + KCI  K+++CN  R  T IV N   K +K  ++ +
Sbjct: 289 IGKCINNKKLECNVKREATSIVQNKCRKPEKAIKIQQ 325


>AY089344-1|AAL90082.1|  922|Drosophila melanogaster AT16542p
           protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 414 VDKCIKMKRVKCNKVRTVTEIV-NSDEKIQKTYELAE 521
           + KCI  K+++CN  R  T IV N   K +K  ++ +
Sbjct: 188 IGKCINNKKLECNVKREATSIVQNKCRKPEKAIKIQQ 224


>AE014296-2480|AAF49661.2|  922|Drosophila melanogaster CG13457-PA,
           isoform A protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 414 VDKCIKMKRVKCNKVRTVTEIV-NSDEKIQKTYELAE 521
           + KCI  K+++CN  R  T IV N   K +K  ++ +
Sbjct: 188 IGKCINNKKLECNVKREATSIVQNKCRKPEKAIKIQQ 224


>AE014296-2479|AAN11789.1| 1023|Drosophila melanogaster CG13457-PB,
           isoform B protein.
          Length = 1023

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 414 VDKCIKMKRVKCNKVRTVTEIV-NSDEKIQKTYELAE 521
           + KCI  K+++CN  R  T IV N   K +K  ++ +
Sbjct: 289 IGKCINNKKLECNVKREATSIVQNKCRKPEKAIKIQQ 325


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,721,212
Number of Sequences: 53049
Number of extensions: 311296
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2032955904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)