Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b05
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0923 + 20843477-20845044,20846081-20846996                       29   4.5  
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058     29   4.5  
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409...    28   5.9  
05_05_0256 - 23647736-23648947                                         28   5.9  
02_05_0460 - 29224525-29224620,29225525-29226625                       28   7.8  

>04_03_0923 + 20843477-20845044,20846081-20846996
          Length = 827

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 507 VGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMFKTATLQLRNNAQPGHRAAH 668
           VG++    ID+      ++ KL  G+FG+ +R M +  +  +R     GHR+ +
Sbjct: 488 VGIIAFRYIDLQRATKNFSKKLGGGSFGSVFRAMLRLFSTTIR-----GHRSGY 536


>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
          Length = 339

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 343 YHEVIAIVTTQKFTKLPCASLWKKLAGFLTARSSTSFHLRYNGKTTVSL 489
           YH    +   Q FT+ PC    +++A  LTARS      R  G+  VS+
Sbjct: 3   YHYRTVVSQQQNFTR-PCFGWSRRIAQQLTARSMAFLVERCGGEMVVSM 50


>07_03_1003 +
           23239829-23240121,23240257-23240349,23240785-23240993,
           23241585-23241729,23241809-23241881,23242165-23242311,
           23242411-23242536,23242653-23242712
          Length = 381

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 585 TCPATTSRCTCWVWRSRQSSCRARRLR 505
           +CPA+++R T W  R+R SS  A R R
Sbjct: 32  SCPASSARRTTWRPRARLSSGNAARAR 58


>05_05_0256 - 23647736-23648947
          Length = 403

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 579 PATTSRCTCWVWRSRQSSCRARRLRISNTCK*HRRL 472
           PA T+   CW  R R +SCR++  R +     HRRL
Sbjct: 362 PAETAASGCWGRRRRTTSCRSKPRRAT-----HRRL 392


>02_05_0460 - 29224525-29224620,29225525-29226625
          Length = 398

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -2

Query: 626 KRRGFKHYTIVVAKRARQQLHGVRVGFGVHVNQVAAHDAYVYQILVSDTVV 474
           K+R    +T    +R R+  H  RVG+ +H    AA DA+  Q+ VS  V+
Sbjct: 318 KKRFRTKFTAEQKERMREFAH--RVGWRIHKPDAAAVDAFCAQVGVSRRVL 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,456
Number of Sequences: 37544
Number of extensions: 319457
Number of successful extensions: 828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)