Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b05
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.87 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.1  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 264 LCARRAYRSANAPAADIN-DTFLEKISIPRGHRDCYDAKVY 383
           L + +  R     A DIN +TF+  I++  G   C DA  Y
Sbjct: 168 LTSDKLLRQYRLRAEDINMNTFIANIAVDLGKGGCNDAFAY 208


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 638 ISQLKRRGFKHYTIVVAKRARQQLHGVRVGFGVHVNQVAAHDAYVYQILV---SDTVVFP 468
           ISQL++     Y I++  +  Q          VHVN+     A+V  +L    + +V+FP
Sbjct: 97  ISQLRKEVSLLYRILLGAKDYQTFLKTAAWARVHVNEGQFLKAFVAAVLTRQDTQSVIFP 156


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 501 IYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRI 605
           + +G+    LIDVN K    T  +      NDY++
Sbjct: 48  VKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKL 82


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 481 PSSFHCNVNGN 449
           P++F CNV GN
Sbjct: 324 PATFTCNVRGN 334


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 420 RFFDSAFIYKFPFTLQWKDDGVTYKYLI 503
           ++F+   + +  F L + + GVTYK+ I
Sbjct: 47  KYFEQT-LNELNFNLNYVNKGVTYKHTI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,090
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)