Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b02
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   1.5  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   5.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.8  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   7.8  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -1

Query: 450 LATGLWRVKNVILSKKTVHCNCWLALKNQHNTVHVQPSRGFI 325
           LA G++R+ + ++ + T+H   ++ LK    T++   + GF+
Sbjct: 564 LANGIYRLDDTLVLEGTLHAQYYIDLKRGRVTLNQMSNIGFV 605


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 466 LPT---PVANSPLSPVRQPPKSNIKPPTRISLPT 558
           LPT   P  N+P  PV   P  +I+PP  ++LPT
Sbjct: 334 LPTSNLPSQNAPARPVE--PSPSIQPPNLLNLPT 365


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 415 NNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK 531
           N +  A KT  +GR+ S   PV +SP  PV    K + K
Sbjct: 327 NRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAK 365


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 469  PTPVANSPLSPVRQPPKSNIKPPTRISLPTRT 564
            P PV+N   SP  +PPK +  P   +S P  T
Sbjct: 972  PLPVSNILSSPTSEPPKDH-PPSAPLSKPVST 1002


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 463 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFS 570
           S+P   A S  SPV++PP      P R++  T + S
Sbjct: 206 SVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNS 241


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 409 RENNIFDAPKT-GGKGRVKSLPTPVANSPLSPVRQP 513
           + N  +DA +T G   +V   P P   +PL+ + +P
Sbjct: 152 KHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKP 187


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 433 PKTGGKGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTRISLPTRT 564
           P T    R    P   A++P  P + PP  S++ PP + + P ++
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 463  SLPTPVANSPLSPVRQPPKSNIKPPTRISLP 555
            S+P+P A SP    + PP S+  PP   + P
Sbjct: 1039 SVPSPSALSPSVTPQLPPVSSRLPPVSATRP 1069


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 388 LLVSTQKSTQYCARSAIERLYIRKPY 311
           ++ S Q + Q C     +RLYI K Y
Sbjct: 443 IVSSVQSTLQVCGAQTSDRLYISKSY 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,622
Number of Sequences: 5004
Number of extensions: 46763
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)