Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27b02
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 32 0.28
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 31 0.85
02_01_0791 - 5930553-5930802,5931042-5932351 29 2.0
12_01_0082 - 662016-663215 29 2.6
11_01_0066 - 536281-537196,537397-537452 29 2.6
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991... 29 2.6
06_03_0661 + 23225514-23227073 29 3.4
06_03_0905 + 25843547-25844314 28 4.6
11_06_0610 - 25449085-25453284 28 6.0
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 27 8.0
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 27 8.0
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 430 APKTGGKGRVKSLPTPVANSPLSPVRQPPK 519
AP GG+GR+ + P P +++PL+ +PP+
Sbjct: 40 APDGGGQGRLPAPPPPTSDAPLAVQNKPPE 69
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 30.7 bits (66), Expect = 0.85
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -3
Query: 496 TAASWRQALAKI*HGPCHRSLARQKCYSLEKNGSL*LLVSTQKS 365
+A+ WR LA++ P S +++ S+++ GS +LVST+K+
Sbjct: 247 SASWWRPVLARMVGRPVSVSGLKKRLVSIDRKGSYTMLVSTRKT 290
>02_01_0791 - 5930553-5930802,5931042-5932351
Length = 519
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 401 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC 496
VF + FLTR RPV V C + P RRC
Sbjct: 89 VFLSTVRFLTRPRPV-YLVDFACYKPPPERRC 119
>12_01_0082 - 662016-663215
Length = 399
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 67 RHYIFLDVQHVTAGSYHVALLVINHLYYPARKQA 168
R ++ L V++ +G Y + + NHL+YP+ + A
Sbjct: 3 RRFLNLVVENARSGLYSLRRIPANHLFYPSTRAA 36
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 469 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRT 564
P +A P SP PP S PP PT T
Sbjct: 217 PPSIATPPPSPASPPPPSTATPPPPSPTPTTT 248
>08_02_1227 -
25398063-25398302,25398629-25398790,25399019-25399150,
25399909-25399961,25400465-25400942
Length = 354
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 481 ANSPLSPVRQPPKSNIKPPTRISLP 555
A SPL P PP SN +PP S+P
Sbjct: 328 AGSPLHPGIAPPSSNSQPPFLSSMP 352
>06_03_0661 + 23225514-23227073
Length = 519
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 401 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC--RLFVSRQNLTSNHLRASL 550
VF + FLTR RPV + C + P R+C F+ +LT + A+L
Sbjct: 93 VFLSTLYFLTRPRPV-YLLDFACYKPDPQRKCTRETFMRCSSLTGSFTDANL 143
>06_03_0905 + 25843547-25844314
Length = 255
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 469 PTPVANSPLSPVRQPPKSNIKPPTRISLPT 558
P P+ P PV PPK + P ++ PT
Sbjct: 76 PPPLVAPPKVPVTHPPKGPVTRPPPVTYPT 105
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 457 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLP 555
VKSLP P +P+S + PP ++ PP +SLP
Sbjct: 1261 VKSLPPP---APVS-LPPPPVKSLPPPAPVSLP 1289
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 185 IDTDLRVGQTGFI*PVPSTALVSRAKCLVTRLS 283
ID+D R G F +P + L RA+C ++LS
Sbjct: 21 IDSDSRTGSCLFGSVLPGSELTGRARCSTSKLS 53
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 448 KGRVK-SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRT 564
KG V ++PT N+P +PV P + N PP ++ P T
Sbjct: 99 KGAVSPAVPTRPQNAP-TPVTPPKEYNAPPPVELTPPAPT 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,911
Number of Sequences: 37544
Number of extensions: 321445
Number of successful extensions: 1138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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