Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27b02
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.30 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   0.92 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.92 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.5  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 435 WRVKNVILSKKTVHCNCWLALKNQHNTVHV 346
           W  KN +        +CWL +   HN + V
Sbjct: 105 WNTKNCVNPYDRDSLSCWLQMTKHHNFIKV 134


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 463 SLPTPVANSPLSPVRQPPKSNIKPPTRI 546
           S+P  V + P+  +RQ  + NI+P T +
Sbjct: 20  SVPKVVYDGPIYELRQIEEENIEPDTEL 47


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 472 TPVANSPLSPVRQPPKSNIKPPTRISL 552
           TP +++P+SPV  P   ++  P R +L
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPVRETL 462


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 454 RVKSLPTPVANSPLSPVRQPPKSNIKPPTRIS 549
           +V    +P+   P++PV++      +PP R+S
Sbjct: 11  KVDRSTSPLPRKPVNPVQELKALFAEPPVRVS 42


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 94  HVTAGSYHVALLVINHLYY 150
           + T GS+++ L V+  +YY
Sbjct: 205 YATLGSFYIPLFVMIQVYY 223


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = +1

Query: 250 VARKVPCDQALLRIYNFISIDKVFVYKASRWLNVHSIV 363
           +A  +     + R+Y    IDK F++K    ++ + ++
Sbjct: 257 LAASIKAGYTIDRLYELTKIDKWFLHKMKNIIDYYLVL 294


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 282 ESLVTRHFARDTRAVEGTGYIKPVCPTRKSV 190
           ESL T   +     V   GY+KP+ P ++ +
Sbjct: 308 ESLSTSGSSGILTPVSPYGYVKPISPEQEEL 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,830
Number of Sequences: 438
Number of extensions: 3540
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)