Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a23
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   5.1  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    24   8.9  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    24   8.9  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    24   8.9  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    24   8.9  

>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 94 NKYSLLNIENNISCLRSKRFLRHFHHFLKE 5
          N+    NI+N    L+  + +RH+H+ LKE
Sbjct: 8  NRIGKNNIDN-AKGLKGNKLIRHYHNLLKE 36


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -1

Query: 305 TTFPLFTGRTKYASVRSAFSNNLSNGSIRNT*NKRKFSIHNTH---ENAINKSNQSTLAH 135
           +  PLF      ++  S FS  L +G I++T   R+F+   TH   ++ + K+ ++T+  
Sbjct: 794 SVMPLFESSHLASTPVSHFSLGLKDGYIQSTSPLRRFTDFFTHHQIQSVLLKTPKNTIPD 853

Query: 134 G 132
           G
Sbjct: 854 G 854


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = +3

Query: 57  EILFSMFNKEYLLNKVQNQHNHRY*AMCKR*LVTFVYCILVCIMYTKLSFISSVSNTTIR 236
           E   +  NK+ +LN +          +C    +   +CI+ CI++  + F          
Sbjct: 175 ETFSTRLNKKIILNTIVTSF------ICWSNAIALGFCIIACILWRMIFFKVPARALIFT 228

Query: 237 QIVAEGRSNRGVF 275
           Q V  G   +G F
Sbjct: 229 QFVPIGVLGQGAF 241


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = +3

Query: 57  EILFSMFNKEYLLNKVQNQHNHRY*AMCKR*LVTFVYCILVCIMYTKLSFISSVSNTTIR 236
           E   +  NK+ +LN +          +C    +   +CI+ CI++  + F          
Sbjct: 175 ETFSTRLNKKIILNTIVTSF------ICWSNAIALGFCIIACILWRMIFFKVPARALIFT 228

Query: 237 QIVAEGRSNRGVF 275
           Q V  G   +G F
Sbjct: 229 QFVPIGVLGQGAF 241


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = +3

Query: 57  EILFSMFNKEYLLNKVQNQHNHRY*AMCKR*LVTFVYCILVCIMYTKLSFISSVSNTTIR 236
           E   +  NK+ +LN +          +C    +   +CI+ CI++  + F          
Sbjct: 175 ETFSTRLNKKIILNTIVTSF------ICWSNAIALGFCIIACILWRMIFFKVPARALIFT 228

Query: 237 QIVAEGRSNRGVF 275
           Q V  G   +G F
Sbjct: 229 QFVPIGVLGQGAF 241


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = +3

Query: 57  EILFSMFNKEYLLNKVQNQHNHRY*AMCKR*LVTFVYCILVCIMYTKLSFISSVSNTTIR 236
           E   +  NK+ +LN +          +C    +   +CI+ CI++  + F          
Sbjct: 175 ETFSTRLNKKIILNTIVTSF------ICWSNAIALGFCIIACILWRMIFFKVPARALIFT 228

Query: 237 QIVAEGRSNRGVF 275
           Q V  G   +G F
Sbjct: 229 QFVPIGVLGQGAF 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,394
Number of Sequences: 5004
Number of extensions: 24831
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)