Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a22
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    32   0.072
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.0  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   3.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   6.2  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   8.3  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   8.3  

>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 31.9 bits (69), Expect = 0.072
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 552 IMLKINSADAELYRPRFIFCATRHFCASHHTLHTQLRRSC*TF 424
           I  K+N A A+++ P F++   R+F AS H   T L   C TF
Sbjct: 264 IQAKVNDASADVHEP-FVYNHFRNFDASMHVNSTGLEDLCLTF 305


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = -1

Query: 178 DGFCNATNALLNAQAPDLI----ECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDT 17
           DG     +  L+A  P  +      D  LG+       G  V  QACVS YR  ++ T
Sbjct: 551 DGLYYIIDGFLDATCPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 13  FPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRILS 126
           +P      C  +  LET   +RLR K      +DRI+S
Sbjct: 515 YPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIIS 552


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 73  LRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYTADPSRTV 252
           L  R K       ++ L S  P+R  K +  +KNHP         +  + L  A P +T 
Sbjct: 420 LAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTA 479

Query: 253 T 255
           T
Sbjct: 480 T 480


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 505 VYFLRNQAFLCVTPHSSHSIKTIMLNFWQ 419
           +YFL N  ++  +   +HSI+   L +W+
Sbjct: 404 IYFLENYNYIPDSNGLNHSIRVSALRYWR 432


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -1

Query: 274 VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIE 119
           ++C ++ LP V D +C    V S   S+L    G C  T++++ A + + I+
Sbjct: 446 LECLVSVLPSVPDIRC----VHSVLTSQLNETTGRCEMTDSIIIASSNETIK 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,720
Number of Sequences: 5004
Number of extensions: 47021
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)