Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a22
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    31   0.61 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   1.1  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   1.1  
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    30   1.4  
U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 123 IKSGACAFSKALVALQKPSWQVNSLAALEITQ 218
           +K  A    KAL +L+K SWQV+SL  L   Q
Sbjct: 192 VKGQAHRLEKALASLEKVSWQVSSLLGLPAIQ 223


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 298 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 167
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 298 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 167
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -1

Query: 301 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALLNAQAPDL 125
           ++  +H +G D       C    +C  D C+         C D  CN++N L+   A  L
Sbjct: 60  SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGIL 119

Query: 124 I 122
           I
Sbjct: 120 I 120


>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
           protein F08D12.7 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 35  SVRAHACLRHDKISACGENVKQAQCG 112
           S +   C RH K+  C   V +A CG
Sbjct: 291 SKKEETCERHTKLKECTRTVMEASCG 316


>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 304 LNFTFQHNRGVDCSLNRLPCVTDQQCRDNC 215
           +N+ +    G  C  N +PC+    C  NC
Sbjct: 401 VNYNYDLRFGAFCDTNTMPCLRFDNCIRNC 430


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -1

Query: 241  TDQQCRDNCVISSAASELTCQDGFCN-ATNAL--LNAQAPDLIECDPALGLLHIFSAGGD 71
            T    +   +I +   E   ++G C   TN +  L  QA  L+  D A   +HI  +  D
Sbjct: 955  THSDAKTIVMIDTTEDESLIEEGLCREVTNRVQRLRKQAK-LVSTDTAH--VHIVVSPAD 1011

Query: 70   FVVSQACVSTYRDLVDDTGTP 8
              +++   +   D+V  TGTP
Sbjct: 1012 SQLAKVVAAKLNDIVSATGTP 1032


>Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical
           protein F27E5.4 protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 274 VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC-NATNALLN 143
           V CSL +L C  D QC     +  +  E     G C +    LLN
Sbjct: 99  VHCSLGKLACEGDLQCNSKFGVFMSECEADAARGACTDKCKTLLN 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,031
Number of Sequences: 27780
Number of extensions: 286928
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)