Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a21
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746...    29   2.0  
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340...    29   2.6  
01_05_0091 + 18048595-18050559                                         29   2.6  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    29   3.5  
12_02_0678 + 21868038-21868161,21868256-21868587                       28   6.1  
01_06_1037 + 33990358-33991263                                         28   6.1  

>03_02_0804 +
           11374219-11374221,11374326-11374473,11374556-11374629,
           11374736-11375233,11375749-11376093,11376178-11376390,
           11376669-11377457,11377686-11377769
          Length = 717

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
 Frame = -1

Query: 505 TGTLQSSYMLSCVTSPGRKQLHKRAKPASVSANNHTPVLGLHDRARSRSKAKQ*ASPARI 326
           TGT   +  L+  +   + Q+     PAS +A + +P +G   +A       + ++P   
Sbjct: 158 TGTSAVASRLANTSMKNKYQMSGNTAPASQTAPSGSPAVGRPQQAYENESTNKPSNPPDA 217

Query: 325 SFSCSWPSSPRILTI-VSSSN-----NWQLANPSRHRLQSLRVEHG 206
           + S    SS  ++T+ V +S+          N S+  +QS++V  G
Sbjct: 218 NMSRRDKSSTSLVTVPVDASSTDKDGKSDEGNQSKEHVQSIQVTSG 263


>12_02_1094 +
           26032135-26032164,26032975-26033152,26033234-26034017,
           26034135-26034216,26034968-26035177
          Length = 427

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -1

Query: 454 RKQLHKRAKPASVSANN-HTPVLGLHDRARSRSKAKQ*ASPARISFSCSWPSSPR-ILTI 281
           +K+L   ++ A+VS  +  T +  +  + +SRS     A+   +S  CS P+SPR   + 
Sbjct: 184 QKRLRVSSEAAAVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGAASA 243

Query: 280 VSSSNNWQLANPSRHRLQSLRVEHG 206
            S+S+  +L   +R  + +L ++ G
Sbjct: 244 SSASSERELQIRTRREIAALGLQLG 268


>01_05_0091 + 18048595-18050559
          Length = 654

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 183 HECHGALTPCSTRSDCNLCREGL-ANCQLFDEDTIVKMRG 299
           HEC G +      +D N+CRE L     L D+  +  + G
Sbjct: 61  HECRGVIAQSLGDADSNICREALHLMMGLIDDSNVTDIAG 100


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 286 SRCVAMTAKNRRSLFEREKPTAWLWIENAPDRVTPTRVCGCWPKLRLVSLFCAVAYG 456
           +RC AM  K  R++   E+    +   N  D++      GC  K R++S+      G
Sbjct: 635 TRCTAMVPKRSRTVVAAEEAQLMIGRRNEKDKLIKMLDSGCDAKHRVISVISVWGMG 691


>12_02_0678 + 21868038-21868161,21868256-21868587
          Length = 151

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 384 NPNTGVWLLAETEAGFALLCSCLRPGLVT 470
           +P  G  L AE E G  +L SC  P LVT
Sbjct: 59  DPKAGPALAAEAENGSMMLWSCAPPKLVT 87


>01_06_1037 + 33990358-33991263
          Length = 301

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 388 PTRVCGCWPKLRLVSLFCAVAYGP 459
           P R+ G WP L  +  FC  A GP
Sbjct: 117 PGRIVGGWPALAKMLFFCCGAAGP 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,734,790
Number of Sequences: 37544
Number of extensions: 335306
Number of successful extensions: 1087
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)