Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a21
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    30   1.0  
AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical...    28   4.1  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    27   9.5  
U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    27   9.5  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 303 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETEAGFALLCSC 449
           +G+E  E+ + AG+ YC   +D  R   C    G W L ET     + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487


>AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical
           protein F44E7.7 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 421 RLVSLFCAVAYGPDLLRSLTCTKIATCPWAARLTAVSTISTALRSG 558
           R V+ +  V YGP  LR +    +    WAA L  VS       SG
Sbjct: 289 RNVAFYVLVLYGPTYLREVLHFDVKGTGWAAALPFVSCAIVKFASG 334


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 66   YVNLMDVHHEEVRYPIAVFDNTGVXXXXXXXXXXXXGNTHECHGALTPCST 218
            Y N+ D+    VR     F+NTG+            G+T  C G +  C+T
Sbjct: 886  YPNMADMPSFRVRRS-RPFENTGLDYFGPMTFRKEDGSTESCWGCVLSCAT 935


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 180  THECHGALTPCSTRSDCNLCREGLANCQL 266
            T EC GA +P  T    +L R+G AN  +
Sbjct: 2454 TGECEGATSPPKTSQRGHLFRDGFANVSM 2482


>U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical
           protein C24H10.2 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 155 RRFNERHARVVKNRNRITHLF 93
           RRFN   ARV K+RN+ + +F
Sbjct: 46  RRFNSNQARVEKDRNQASMIF 66


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 180  THECHGALTPCSTRSDCNLCREGLANCQL 266
            T EC GA +P  T    +L R+G AN  +
Sbjct: 2454 TGECEGATSPPKTSQRGHLFRDGFANVSM 2482


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 180  THECHGALTPCSTRSDCNLCREGLANCQL 266
            T EC GA +P  T    +L R+G AN  +
Sbjct: 2454 TGECEGATSPPKTSQRGHLFRDGFANVSM 2482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,165,790
Number of Sequences: 27780
Number of extensions: 279128
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)