Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a21
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 200 SPVTFVCIAFDYYFGRRFNERHARVVKNRNRITHLF 93
           +P T  CI   +  G  F+  +  ++   NRI  +F
Sbjct: 574 TPTTVTCILQRFGVGVSFSAVYGALLTKTNRIARIF 609


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 359 QSQAVGFSRSNKLLLFLAVIATHLDYCIFVK 267
           Q +AV     ++  L   V+  HLD C F +
Sbjct: 164 QEKAVAAELEDEQRLLATVVQAHLDTCDFTR 194


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 200 SPVTFVCIAFDYYFGRRFNERHARVVKNRNRITHLF 93
           +P T  CI   +  G  F+  +  ++   NRI  +F
Sbjct: 664 TPTTVTCILQRFGVGVSFSAVYGALLTKTNRIARIF 699


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 83  IHQVYIRVHYCNNH*KKQQYNSKMHF 6
           IH    + +Y NN+     YN K+++
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 83  IHQVYIRVHYCNNH*KKQQYNSKMHF 6
           IH    + +Y NN+     YN K+++
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYY 114


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 310  KNRRSLFEREKPTAWLWIENAPDRVTPTRVCG 405
            + +RSLF+   P   L +++AP    P   CG
Sbjct: 1248 ERQRSLFKDSSPATALMLQHAP----PAYSCG 1275


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 517  GAQPTGTLQSSYMLSCVTSPGRKQLHKRAKPAS 419
            G QP G +QS   +    SP ++  +   +PA+
Sbjct: 972  GCQPGGVVQSQQPIMTDPSPFKRGRYTPPQPAN 1004


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 276 LRQTTGSWLILRGTDCNRCAWSTA 205
           +RQ T S+ +  G  C++C +  A
Sbjct: 28  IRQGTTSYCLGCGDSCHKCKYGIA 51


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 460 DLLRSLTCTKIATCPWAARLTAVSTISTALRSGAC 564
           D+L S+  T  A CP   R   +   S  L  G+C
Sbjct: 149 DILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSC 183


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 385 LHDRARSRSKAKQ*ASPARISFSCSWPSSP 296
           +H R RS  K+K  A+ A    S S  SSP
Sbjct: 365 MHGRGRSGKKSKFNAAVAAAVQSSSIVSSP 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,207
Number of Sequences: 438
Number of extensions: 3568
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)