Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a15
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    30   0.27 
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   2.5  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   3.3  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   4.3  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    26   5.7  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.6  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   7.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   7.6  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   10.0 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   10.0 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   10.0 

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = -3

Query: 337 SIDRSETMKFTKSMPESSVSISFLASAQYLVISNGDIKAIRTRHGIMGLISSGLHFIRPG 158
           S+D +E+  FTK  P   +S SF  SA  L++S  +    + +H +    S+ L+  R  
Sbjct: 420 SVDEAESPHFTKRSPAPYLSKSFRNSALSLLLSQDE----KLQHDVRSASSAALNLPR-- 473

Query: 157 ISTSFRALKTCG*TGFMNS 101
             T  +A      +G +NS
Sbjct: 474 -DTDIKATPNLSQSGNINS 491


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 496 DRTRRTLLEESDCSKSLAIPLIIFGISV 413
           +R R  L+ ES C+  +A+P   F I +
Sbjct: 164 ERIRSLLIAESGCNDGMAVPFFYFAIKL 191


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 558 DYTIKPSELFDNDVYLEEITDVICISLAEIPNLLN 662
           D+T +  E +D   Y+  +T V C SL E+P+LLN
Sbjct: 245 DFTFQ--EAYDRSGYILNVT-VSCGSLFEMPSLLN 276


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 448 LAIPLIIFGISVDSMHCDPLFCLICCSFFT 359
           ++IPLII G+ V    CDP +  +   FFT
Sbjct: 342 ISIPLII-GVHVAIAWCDPAWLKVIILFFT 370


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 528 EFNQTKNTNADYTIKPSELFDNDVYLEEITDVIC-ISLAEIPN--LLNICDV 674
           + N+TK       I  S++F N +YL       C +    +PN  L  +CDV
Sbjct: 227 DINETKKGGPFTEITESDIFVNCIYLSMPIPKFCTVESLNVPNRKLRVVCDV 278


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +3

Query: 222 ALISPLDITRYCAEAKKDILTLLSGIDLVNFIVSLLSIE---FHVLEADVKKEQQMRQKS 392
           +++SP+    Y  +  + I  L S  D    I    + E    H L A  K+E    +  
Sbjct: 425 SIVSPILANIYLHQLDEFIENLKSEFDYKGPIARKRTSESRHLHYLMAKAKRENADSKTI 484

Query: 393 GSQCIESTLIPNIINGIASD 452
               IE   +PN I+GI S+
Sbjct: 485 RKIAIEMRNVPNKIHGIQSN 504


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 158 NINIF*GFENVWLNWFHE 105
           NIN++  F+  WLN FHE
Sbjct: 142 NINVY--FDEEWLNGFHE 157


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 84  TFIMDIEFMKPVQPHVFKALKDVDIP 161
           TFI D+   K  Q  +++  KD DIP
Sbjct: 262 TFIFDVHRAKEFQIIIYEKKKDFDIP 287


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 400 CDPLFCLICCSFFTSASRT*NSIDRSETM 314
           C  LFC  CC+ F     +  S+D +E +
Sbjct: 52  CGKLFCYNCCNSFAKLPVSSVSVDPTEDL 80


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 546 NTNADYTIKPSELFDNDVYLEEITDVIC 629
           NT ++ ++K S  F+ ++ L E+T ++C
Sbjct: 805 NTPSEQSVKVSHFFEFNMKLGEVTLILC 832


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -3

Query: 472 EESDCSKSLAIPLIIFGISVDSMHCDPLFCLICCSFFTSASRT*NSIDRSETMKFTKSMP 293
           E S+  K  ++PL     S  S H       I  S + S +   +S+  S++ +FT S+P
Sbjct: 453 EHSEPFKVSSVPLTSNNFSSIS-HSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVP 511

Query: 292 ESSVSIS 272
            S+ S S
Sbjct: 512 SSTQSYS 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,980
Number of Sequences: 5004
Number of extensions: 49928
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)