Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a15
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591     28   5.9  
10_08_0041 - 14374684-14377339,14377371-14378233                       28   7.8  
06_03_1296 - 29104857-29105870                                         28   7.8  
03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325     28   7.8  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    28   7.8  

>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
          Length = 455

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 361 TSASRT*NSIDRSETMKFTKSMPESSVSISFLASAQYLVISNGDIKA 221
           +SAS   +S+ RS      K+ P ++ ++S +ASA  +   NG  KA
Sbjct: 7   SSASFLLSSLRRSLVASLRKASPAAAAALSPMASASTVAAENGAAKA 53


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 222 PFGQDMVLWVLFHQDY 175
           PFG   V WV FH DY
Sbjct: 786 PFGDGSVTWVAFHGDY 801


>06_03_1296 - 29104857-29105870
          Length = 337

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 472 EESDCSKSLAIPLIIFGISVDS 407
           E+++CSK L +PL +F + ++S
Sbjct: 7   EKNNCSKELMVPLALFAVELNS 28


>03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325
          Length = 123

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 304 KSMPESSVSISFLASAQYLVISNGDIKAIR-TRHGIMG 194
           KS PE++ + + +A+    ++  GDI AIR T+H I+G
Sbjct: 3   KSPPETAAAAAEVAARFRSLVDTGDIGAIRQTQHLILG 40


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 TNADYTIKPSELFDNDVYLEEITD 620
           T  DYT  P+E  D+DV +EE+ +
Sbjct: 769 TPMDYTPAPTETLDHDVTIEEVEE 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,732
Number of Sequences: 37544
Number of extensions: 257847
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)