Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a15
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    28   7.0  
L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.6 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 670 SQIFSKFGISAKLIHITSVISSKYTSLSNNSEGLIV*SAFV 548
           S I    GISA+ + +T +  +K+  L+N+  GLI   AF+
Sbjct: 138 SGIAFAIGISAQGVFLTEISPAKFRGLTNSLSGLIGNCAFL 178


>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
           protein R08E3.1b protein.
          Length = 1465

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 391 LFCLICCSFFTSASRT*NSIDRSETMKFTKSMPESSVSIS-FLASAQY 251
           + C I C F   AS T NS+  S     T   P  SVS   + AS  Y
Sbjct: 16  IICRIGCQFNYQASATCNSVGASVATVVTADNPRRSVSFPIYCASLAY 63


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
           protein R08E3.1a protein.
          Length = 1512

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 391 LFCLICCSFFTSASRT*NSIDRSETMKFTKSMPESSVSIS-FLASAQY 251
           + C I C F   AS T NS+  S     T   P  SVS   + AS  Y
Sbjct: 16  IICRIGCQFNYQASATCNSVGASVATVVTADNPRRSVSFPIYCASLAY 63


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 523 NCACICNSSDRTRRTLLEESDCSKSLAIPLIIFGISVDSMHCDPL 389
           NC C CN S  TRR L+   +C K       +  +++  M  D +
Sbjct: 366 NCRC-CNWSFATRRCLMSHVECLKKAGDARNVKPVAIPRMAADSI 409


>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 561 YTIKPSELFDNDVYLEEITDVICISLAEIP 650
           Y+ K SEL+DN  YL   + V  + L  IP
Sbjct: 14  YSRKSSELYDNIAYLHHPSGVTVVVLRNIP 43


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 523 NCACICNSSDRTRRTLLEESDCSKSLAIPLIIFGISVDSMHCDPL 389
           NC C CN S  TRR L+   +C K       +  +++  M  D +
Sbjct: 366 NCRC-CNWSFATRRCLMSHVECLKKAGDARNVKPVAIPRMAADSI 409


>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 535 LNSTNCACICNSSDRTRRTLLEESDCSKSLAIPLIIFGISVDS 407
           L++ NC  + NS+D T   +L + DC +   I    +G++V +
Sbjct: 332 LSNLNCVDLINSADSTEFDVLTDCDCPQPCEID--SYGVTVST 372


>Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical
           protein F08B12.1 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
 Frame = -3

Query: 667 QIFSKFGISAKLIHITSVISSKYTSLSNNSEGLIV*SA--------FVFFV*LNSTNCAC 512
           ++ +   ++  L+ + S +  KY       +G IV S         FV F       C C
Sbjct: 71  ELLNDQALTGDLVELQSSVEKKYWQWIEFQKGWIVLSVGLVAISVLFVVFYFFYKC-CVC 129

Query: 511 ICNSSDRTRRTLLEESDCSKSLAIPLIIFGISVDS 407
           IC+ S + + T      C +S+   L+   +S ++
Sbjct: 130 ICSRSSKKQNTDARYDGCKRSMCNLLLFVLVSANA 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,949,512
Number of Sequences: 27780
Number of extensions: 272921
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)