Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a10
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    29   0.67 
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   3.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.3  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.3  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.3  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 692 RLTTIYYLLTYKDDFEIHEYIFGFLKRIYFL 600
           +++ +++LLT    F I ++IF  ++++YFL
Sbjct: 304 KISLLHFLLTESKHFLISDHIFSEIQKVYFL 334


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
 Frame = -3

Query: 425 LSLSERARSAGLSRHFRSVVMSNLYLSAFALDFYSRFFLKVSPCVNLKNFRDINNFK--- 255
           ++LS  +  + + R+F +V  S + LS  AL+     FL       L  +R+I+  +   
Sbjct: 195 VALSLESFPSNIERYFSAVNHSAIELSD-ALNSKIDDFLNEEVIFRL--WRNIDRIRLHA 251

Query: 254 -QIQTCMAHVLRTNTLSIFELMHLDWF*NEILQI*CTTNKHNMKHFLLSLCTVTA 93
            + Q CM +  R+    +   +H   F N I Q   T  + NM+ + LS+C + A
Sbjct: 252 IRAQLCMRNQFRSMNTDLCYAIHYACFVNPIFQNTDTEYEANMEVW-LSICEIDA 305


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 677 YYLLTYKDDFEIHEYIFGFLKRIYFLIFL 591
           +Y+L    + ++ EY  GF+K  YF IF+
Sbjct: 499 FYILLNSFNQKLMEYFKGFVKLDYFSIFI 527


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 184 IGFKTKFCKFNVQLTNII 131
           +GFK  FC F V LT ++
Sbjct: 518 VGFKNSFCVFLVALTRVV 535


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 296 CVNLKNFRDI-NNFKQIQTCMAHVLRTNTLSIFELMHLDW 180
           C N  +F    ++FK++ + + ++L+  T + FE+  ++W
Sbjct: 275 CCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNW 314


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 345 CFRLGFLLKIFLESFS 298
           CFRLG L  IF+  FS
Sbjct: 576 CFRLGLLFSIFVVGFS 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,338
Number of Sequences: 5004
Number of extensions: 59949
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)