Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a10
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0573 + 23985468-23987054                                         30   2.1  
04_04_0512 + 25806599-25808080                                         29   4.9  
01_06_0323 - 28476459-28476915,28477075-28477525,28477623-284779...    29   4.9  
09_03_0206 + 13485420-13486439                                         28   8.6  
04_03_0641 + 18261332-18262423                                         28   8.6  
01_04_0120 + 16242220-16242483,16242538-16243424,16244604-162452...    28   8.6  

>02_04_0573 + 23985468-23987054
          Length = 528

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -1

Query: 562 SLNLFFNSVETPDTAPIFIFNLSSIRTLRVSSAML 458
           SLN+F N++      P  +FNLSS++TL +S  ML
Sbjct: 220 SLNIFMNNIS--GRLPHELFNLSSLQTLWLSDNML 252


>04_04_0512 + 25806599-25808080
          Length = 493

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 481 LRVSSAMLNP*LFISFIRCYLSRNEPVLPACPATSGVS*CPTC-TCLLSPWIFTQDFS*K 305
           +  SS+ L+  LF+ +I    + + PV   C  TSG++    C  C  +   F    + K
Sbjct: 177 MTTSSSKLDATLFVVWITATFTYSTPVFFQCAVTSGMASLAACFACFATMCCFALMQANK 236

Query: 304 FLLALI*RISGISTISNKFKHAW 236
             L      +G + +  +  HAW
Sbjct: 237 VHLWSSRDAAGRNAVMAEVPHAW 259


>01_06_0323 -
           28476459-28476915,28477075-28477525,28477623-28477904,
           28478089-28478118,28480560-28481433
          Length = 697

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 326 KNPRRKQTSTSWTLRHSGSGGTSRQNG 406
           K   +K  S+S  L++SGSGGT R  G
Sbjct: 325 KRKHKKVNSSSKLLKYSGSGGTPRSMG 351


>09_03_0206 + 13485420-13486439
          Length = 339

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 PRRKQTSTSWTLRHSGSGGTSR 397
           PRR  T+T+WT R   +GG  R
Sbjct: 44  PRRSTTTTTWTPRREPTGGGPR 65


>04_03_0641 + 18261332-18262423
          Length = 363

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = -3

Query: 518 TNLYFQSFLDSHFTRIVRHVKSITVYLFHPLLSLSERARSAGLSRHFRSVVMSNLYLSAF 339
           T++Y       H   +   + S+T+ L + LLSL E    A +      +V S   L+  
Sbjct: 189 TSIYVSEASSRHPVGVFSSLSSVTISLCNALLSLDEFLMPAYMPVVKTILVESCRQLALL 248

Query: 338 ALDFYSRF----FLKVSPCVNLKNFR 273
            +D   RF     L++  C NL   R
Sbjct: 249 PIDELHRFSCLEVLRIESCPNLNTRR 274


>01_04_0120 +
           16242220-16242483,16242538-16243424,16244604-16245264,
           16245582-16245943,16246071-16246140,16246666-16246740
          Length = 772

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 510 KIGAVSGVSTELKNRFSEDFNG*SLFEK 593
           KI  + G+S   KNRFSED +G  + +K
Sbjct: 535 KIDLLKGISRFEKNRFSEDISGAPICKK 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,918
Number of Sequences: 37544
Number of extensions: 328234
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)