Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a10
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF016426-2|AAB65345.1|  335|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   1.9  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    28   7.8  
L39927-1|AAA98784.1|  344|Caenorhabditis elegans cathepsin B-lik...    28   7.8  
L39896-1|AAA98786.1|  344|Caenorhabditis elegans cathepsin B-lik...    28   7.8  
AF016426-3|AAB65346.1|  344|Caenorhabditis elegans Cysteine prot...    28   7.8  

>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
 Frame = -3

Query: 716 RPKMNSVNRLTTIYYLLTYKDDFEI-----HEYIFGFLKRIYFLIFLFK*TLSIKIFTK- 555
           +P +   NR  + Y  ++ KD+F I     H+ I+GFL    F+I +F   L+IK + K 
Sbjct: 133 KPGLIFFNR--SYYTYVSSKDNFYISSTLGHKAIYGFLAPNLFIITIFNTVLNIKAYKKL 190

Query: 554 PILQFS*NARYSTNLYFQS 498
            +L+ +  +   TNL++ S
Sbjct: 191 LVLKKTLRSVPDTNLFYMS 209


>AF016426-2|AAB65345.1|  335|Caenorhabditis elegans Hypothetical
           protein W07B8.4 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 606 VNTLQEAENILVYFEIVFVCEKIINGGKPIDAVHFW 713
           VNTL  AE+IL      F C     GG PI A  +W
Sbjct: 122 VNTLLSAEDILTCCTGKFNCGDGCEGGYPIQAWRYW 157


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 531 VSTELKNRFSEDFNG*SLFEKKDQKVNTLQEAENILV-----YFEIVFVCEKIINGGKP 692
           + TE+   F+ + +  SLF+ K+   N +Q+     +     Y  +VF  EK+IN  KP
Sbjct: 1   METEVMKSFNNELS--SLFDSKNMSKNKIQDITKAAIKAKSQYKHVVFSVEKLINKCKP 57


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 447 CLSLSSAVISLGTSPFCRLVPPLPECRNVQ 358
           CL      I   + PFC ++P LP  R+ +
Sbjct: 144 CLQYDDRPIDFRSPPFCCIIPKLPTARSTE 173


>L39927-1|AAA98784.1|  344|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 606 VNTLQEAENILVYFEIVFVCEKIINGGKPIDAVHFW 713
           VNTL  +E++L     +F C     GG PI A  +W
Sbjct: 131 VNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWW 166


>L39896-1|AAA98786.1|  344|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 606 VNTLQEAENILVYFEIVFVCEKIINGGKPIDAVHFW 713
           VNTL  +E++L     +F C     GG PI A  +W
Sbjct: 131 VNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWW 166


>AF016426-3|AAB65346.1|  344|Caenorhabditis elegans Cysteine
           protease related protein 5 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 606 VNTLQEAENILVYFEIVFVCEKIINGGKPIDAVHFW 713
           VNTL  +E++L     +F C     GG PI A  +W
Sbjct: 131 VNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWW 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,354
Number of Sequences: 27780
Number of extensions: 330385
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)