Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27a08
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 62 9e-11
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 32 0.064
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.34
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.59
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 5.5
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 5.5
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 5.5
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 9.7
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.7
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.7
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 9.7
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 61.7 bits (143), Expect = 9e-11
Identities = 43/118 (36%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Frame = +2
Query: 239 KVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 397
+VH IF +K + HL + T+LYTLIVKPD T+EV I+ + V G
Sbjct: 168 RVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGS 227
Query: 398 LEADW--DFLPPKKIKDPEAKKPEDW--XXXXXXXXXXXXXXXXXXXXXHIPDPDATK 559
L D+ LPP +I DPE KP DW IPDPDA K
Sbjct: 228 LFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVK 285
Score = 35.1 bits (77), Expect = 0.009
Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Frame = +2
Query: 407 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXH-----IPDPDATKXXXX 571
DWD P+ I DP+A KPEDW IP +
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPS-EIINPKCI 327
Query: 572 XXXXXXXXXXXXIDNPDYKGVWAPKQIDN 658
I NP+Y+G W+P I N
Sbjct: 328 EGAGCGEWKPPMIRNPNYRGPWSPPMIPN 356
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 32.3 bits (70), Expect = 0.064
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 236 SSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIEDNASKLTTTST 60
S+S SL P VN + S + ++ L S + S+ NF+S ++S + + S L+T ST
Sbjct: 483 STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPST 542
Query: 59 T 57
T
Sbjct: 543 T 543
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.34
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -2
Query: 200 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDSQY 33
N N F + + S +SGNFS T Q DN S +T ST F S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPSDR 634
Query: 32 HLLQQKT 12
LL +T
Sbjct: 635 DLLSNQT 641
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 257 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE-ADWDFLPPKK 433
S + K H KK +D Y+H+Y + P + + + ++ ES E + D+LP
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196
Query: 434 IKDPEAKKPED 466
+K + P+D
Sbjct: 197 MKQKKG-GPKD 206
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 386 ESGDLEADWDFLPPKKIKDPEAKKPEDW 469
E L+ LP + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 118 EEKFPDDSWESNWVYS 165
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +1
Query: 121 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDD 237
+ F +D + +W EH K ++ + + FS+ +D+
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGDDE 87
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +2
Query: 269 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPE 448
KNH ++ K+ V L + DN Y+ ++ + K + L+ D P +K +
Sbjct: 995 KNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLDSQGKPNLDVKGLD 1054
Query: 449 AKKPE 463
K+ E
Sbjct: 1055 MKRRE 1059
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 407 DWDFLPPKKIKDPEAKKPEDW 469
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 522 TNLNTFQTQMPPNLK 566
T +NT++ Q PPNLK
Sbjct: 171 TAMNTYENQKPPNLK 185
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 163 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 71
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 401 EADWDFLPPKKIKD 442
E+ +D+LPPKK+ D
Sbjct: 179 ESAYDYLPPKKVSD 192
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 275 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 388
H I + + +++ + HL TL KPD+ ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +3
Query: 411 GTSFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTNLNTFQTQMPPNLKTGMMRWTE 590
G S+R + SRT ++ + MT +T K +S + + + Q T
Sbjct: 170 GKSYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKKNSKSESNQDSSNDRSSTAPSTAES 229
Query: 591 NGSHL 605
N HL
Sbjct: 230 NNEHL 234
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 145 PTNHQETS---PQRIHHNLSKIMPAS*QRPVQQLSFSIHSTTF 26
PT H T+ P H N + +P + + + ++ ++TTF
Sbjct: 136 PTTHVNTTTVVPPTTHANTTSFVPTTTESSIHPITTGFYNTTF 178
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 54 FHFRFTVPPSSTKDRPRI 1
FH+R + PP K PR+
Sbjct: 98 FHYRLSPPPGEFKSSPRV 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,813
Number of Sequences: 5004
Number of extensions: 60894
Number of successful extensions: 211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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