Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27a08
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 134 6e-32
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 128 5e-30
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 122 2e-28
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 119 2e-27
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 89 4e-18
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 58 5e-09
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 2.5
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 28 5.7
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 5.7
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 5.7
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 7.6
05_01_0039 + 270145-270224,270347-270417,271075-271180,271837-27... 28 7.6
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 134 bits (324), Expect = 6e-32
Identities = 65/141 (46%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Frame = +2
Query: 239 KVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDF 418
KVH IF+ KNHLIKKD+ C+ D +H+YTLI+ PD TY +LIDN + +SG + WD
Sbjct: 153 KVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDI 212
Query: 419 LPPKKIKDPEAKKPEDW-XXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXX 595
LPPK+IKDPEAKKPEDW IPDPDA K
Sbjct: 213 LPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEW 272
Query: 596 XXXXIDNPDYKGVWAPKQIDN 658
I NP+YKG W K+I N
Sbjct: 273 TAPTIPNPEYKGPWKQKKIKN 293
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPED 234
+VFF+EKF +D WES WV SE E G++ T+GK+ DPED
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED 73
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 128 bits (308), Expect = 5e-30
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Frame = +2
Query: 239 KVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDF 418
KVH I + GKNHLIKKD+ CK D TH+YTLI++PD Y +LIDN + ++G + DW+
Sbjct: 160 KVHAILTKNGKNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSILIDNTEKQTGSIYDDWNI 219
Query: 419 LPPKKIKDPEAKKPEDW-XXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXX 595
+PPK +DPEAKKPEDW I DP+ATK
Sbjct: 220 IPPKNKRDPEAKKPEDWDDNEYIPDPEDKKPEGYDDIPKEITDPEATKPEDWDDEEDGEW 279
Query: 596 XXXXIDNPDYKGVWAPKQIDN 658
I NP+YKG W K++ N
Sbjct: 280 TAPTIPNPEYKGPWNQKKLKN 300
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDDKGTCNLQL 261
+VFF+EKF DD WE WV SE G++ T+GK++ D DDKG C + L
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGD-ADDKGMCEVTL 77
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 122 bits (295), Expect = 2e-28
Identities = 58/141 (41%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Frame = +2
Query: 239 KVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDF 418
K+H+I SY+G+N+ IKKD++C+ D TH+YT I++PD +Y +L+DN + ESG + DWD
Sbjct: 151 KLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWDI 210
Query: 419 LPPKKIKDPEAKKPEDW-XXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXX 595
LPP+KIKD AKKP+DW IPDP K
Sbjct: 211 LPPRKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIW 270
Query: 596 XXXXIDNPDYKGVWAPKQIDN 658
I NP YKG W K+I N
Sbjct: 271 KPRMIPNPAYKGPWKRKKIKN 291
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKG 243
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKG 73
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 119 bits (287), Expect = 2e-27
Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Frame = +2
Query: 239 KVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDF 418
K+H+I SY+G+N+ IKKD++C+ D TH YT I++PD +Y +L+DN + E G + DWD
Sbjct: 151 KLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWDI 210
Query: 419 LPPKKIKDPEAKKPEDW-XXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXX 595
LPP+KIK+ AKKP+DW IPDP K
Sbjct: 211 LPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVW 270
Query: 596 XXXXIDNPDYKGVWAPKQIDN 658
I NP+YKG W K+I N
Sbjct: 271 KPRMIPNPEYKGRWKRKKIKN 291
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKG 243
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRG 73
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 88.6 bits (210), Expect = 4e-18
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 266 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDP 445
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPPKK KDP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDP 574
Query: 446 EAKK 457
EAKK
Sbjct: 575 EAKK 578
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 58.4 bits (135), Expect = 5e-09
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Frame = +2
Query: 239 KVHVIFSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLID-NEKVESGD 397
KVH I +K GK H +K D +H+YT I+KPDN +L+D EK ++
Sbjct: 144 KVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANF 203
Query: 398 LEADWDF----LPPKKIKDPEAKKPEDW 469
L AD DF +P K I DP+ KKPEDW
Sbjct: 204 LSAD-DFEPSLIPSKTIPDPDDKKPEDW 230
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Frame = +2
Query: 338 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXX 517
VKPD+ E + E W P++I DPEA KPEDW
Sbjct: 242 VKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDW--DDEEDGEWEAPKID 299
Query: 518 XXXXXHIPD-PDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDN 658
P + + IDNP+YKG+W P++I N
Sbjct: 300 NPKCEEAPGCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEIPN 347
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 163 SEHPGKEFGKFKLTAGKFFSDPEDDKGTCNLQLQG 267
S HPG F+L G F+ D +++ T + L+G
Sbjct: 1871 SNHPGNPRINFQLVDGVFYGDEDEEHATPTMGLEG 1905
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 376 IVNEDFIGVVRFHNQSVQMCVDI 308
+V EDF+ + F +Q+V +C+D+
Sbjct: 353 LVEEDFVQIAEFLHQAVTICLDV 375
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 142 TNHQETSPQRIHHNLSKIMPA-S*QRPVQQLSFSIHS 35
TNH E P+ H LSKI+ A S RP+ +S+ +H+
Sbjct: 41 TNHVERPPKERH--LSKIIAAASGARPLADVSYCVHA 75
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 365 LIDNEKVESGDLEADWDFLPPKKIKDPE 448
L DN K+++GDL +W P + PE
Sbjct: 107 LTDNSKLDTGDLHGEWKEWRPTQCSVPE 134
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 140 ESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>05_01_0039 +
270145-270224,270347-270417,271075-271180,271837-271969,
272075-272160,272359-272527
Length = 214
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 634 NALVVWVVNHRWLPFSVHLIIPVFRFGGI 548
NA+ V V+N P + LI+P RFG +
Sbjct: 69 NAVTVMVLNFVVTPLELSLIVPFLRFGEV 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,815
Number of Sequences: 37544
Number of extensions: 398563
Number of successful extensions: 1069
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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