Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27a08
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 158 4e-39
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 158 4e-39
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.3
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.3
Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 28 5.1
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 28 5.1
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 28 5.1
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 5.1
AF025468-5|AAB71042.1| 390|Caenorhabditis elegans Hypothetical ... 28 5.1
U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine rec... 27 8.9
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 158 bits (383), Expect = 4e-39
Identities = 74/140 (52%), Positives = 83/140 (59%)
Frame = +2
Query: 239 KVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDF 418
+VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G LE DWD
Sbjct: 138 RVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDL 197
Query: 419 LPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXX 598
LP KKIKDP+AKKPEDW HIPDPDA K
Sbjct: 198 LPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDDEMDGEWE 257
Query: 599 XXXIDNPDYKGVWAPKQIDN 658
IDNP+YKG W PKQI N
Sbjct: 258 PPMIDNPEYKGEWKPKQIKN 277
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKG 243
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHK-DDFGAFKLSAGKFFDVESRDQG 60
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 158 bits (383), Expect = 4e-39
Identities = 74/140 (52%), Positives = 83/140 (59%)
Frame = +2
Query: 239 KVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDF 418
+VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G LE DWD
Sbjct: 138 RVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDL 197
Query: 419 LPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXXXXXX 598
LP KKIKDP+AKKPEDW HIPDPDA K
Sbjct: 198 LPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDDEMDGEWE 257
Query: 599 XXXIDNPDYKGVWAPKQIDN 658
IDNP+YKG W PKQI N
Sbjct: 258 PPMIDNPEYKGEWKPKQIKN 277
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKG 243
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHK-DDFGAFKLSAGKFFDVESRDQG 60
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 305 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD--FLPPKKIKDPEAKKPEDW 469
DD THL+TL+VKP Y V +D + + G++ +D PPK+I D KP DW
Sbjct: 223 DDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDW 279
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 338 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 469
VKPD+ E + E+ DW+ + I DPEAKKP+DW
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDW 334
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 371 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 469
+N + ES DWD P+ + D A KP DW
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDW 315
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 269 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 391
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 269 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 391
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -2
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 254 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 313
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 314 YSSDSNSNSNQSPPG 328
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -2
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -2
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -2
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 314 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 427
+TH +TL VKP N Y+ DN+ ++ E F P
Sbjct: 23 HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61
>AF025468-5|AAB71042.1| 390|Caenorhabditis elegans Hypothetical
protein T27A1.4 protein.
Length = 390
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 351 LSGFTIRVYKCV*TS---SLQRISFLMRWFLPL*LKITCTFVILWV 223
+ +T+ VY C+ S IS LM WFLP + +++ W+
Sbjct: 219 VGNYTVGVYSCIDAHVYFSASTISGLMSWFLPSLFLLIGSWLHFWI 264
>U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 40 protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 622 VWVVNHRWLPFSVHLIIPVFR-FGGIWVWNV 533
+W+ + WL + L+I F FG IW WN+
Sbjct: 193 LWLSVYIWLLTGILLLIVNFGLFGYIWYWNI 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,179
Number of Sequences: 27780
Number of extensions: 354411
Number of successful extensions: 1082
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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