Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a08
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.48 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.48 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 314 YTHLYTLIVKPDNTYEVLIDNEKVES 391
           Y H Y +  KP N  E++  N K+ES
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIES 453


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 314 YTHLYTLIVKPDNTYEVLIDNEKVES 391
           Y H Y +  KP N  E++  N K+ES
Sbjct: 428 YYHSYKMHQKPYNKDEIIYPNLKIES 453


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 637 PNALV-VWVVNHRWLPFSVHLIIPVF 563
           PN +V  W+ + R+LP S+ +++  F
Sbjct: 796 PNGIVKTWIAHDRYLPNSLRILLKRF 821


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 175 GKEFGKFKLTAGKFFSDPEDDKGTCNLQLQG*EPSHQ 285
           G EF K +L     F +  DD   C +Q      +HQ
Sbjct: 509 GVEFQKIELKQCDEFVEDSDDYWNCVIQYNTRAENHQ 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,113
Number of Sequences: 438
Number of extensions: 4201
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)