Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27a06
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 1.3
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 1.7
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 2.9
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 26 2.9
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 3.9
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 5.1
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 6.7
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 24 8.9
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 24 8.9
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 24 8.9
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = -3
Query: 252 YNXVPRSNRVILQVAQHHKRVRFKRINFVYHIGKMFF----HRFVHDH 121
Y V R+ R++ V H N +YH GK++F HDH
Sbjct: 269 YQLVARNMRILFHVC-HLVHADLSEYNLLYHKGKVYFIDVSQSVEHDH 315
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 182 RESISS-TTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQ 51
++S+SS TTL K S SY+ T+ + + +S FK T P +
Sbjct: 546 QKSVSSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNE 590
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 2.9
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 130 YESMEKHFSNVVDEIDSLKXDTFMMLSNLQNNTIRTWDAV 249
Y + +++ +++D +S D S+ NN++ TW+ +
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVI 329
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 91 NELQEIKSILVVMYESMEKHFSNVVDEIDSLKXDTFMMLSNLQNN-TIRTW 240
N L E K L+ + K NVV I ++ D+ + + NN IR W
Sbjct: 81 NSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKW 131
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 261 AIFYNXVPRSNRVILQVAQHHKRVRFKRI 175
A+ + VPR RVI QV+Q R R K+I
Sbjct: 4 AVEKDAVPRKRRVISQVSQACIRCRQKKI 32
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 199 MMLSNLQNNTIRTWDAVVKNGKXI 270
+M+S +NT+R WD VK GK +
Sbjct: 66 LMVSGAADNTMRLWD--VKTGKQL 87
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 371 YINLAISSVYXTLSRXLTTPFFVNST 294
YIN + TL+ LT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Frame = +1
Query: 52 CLVGY---LVYAGHLNNELQE 105
CL+GY LVYAG+ NE ++
Sbjct: 267 CLLGYEFFLVYAGYTTNESEK 287
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 223 NTIRTWDAVVKNGKXISXLDEKI 291
+T + WDA+V +GK +S ++ I
Sbjct: 48 HTQQDWDALVASGKNLSGVESPI 70
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 157 NVVDEIDSLKXDTFMMLSNLQNNTIRTWDAVVKNG 261
N+V + + + +M S +NT R WD +G
Sbjct: 356 NLVSGLSASPENPYMFASVSHDNTCRVWDVRATSG 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,108
Number of Sequences: 5004
Number of extensions: 22391
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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