Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a06
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667...    31   0.31 
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602...    31   0.40 
08_01_0168 - 1385439-1385979,1386081-1387438                           27   5.0  
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755     27   5.0  
07_01_0002 - 10937-11893                                               27   6.6  

>04_04_1312 +
           32565447-32565585,32566008-32566060,32566139-32566771,
           32566844-32566972,32567052-32567144,32567220-32567336,
           32567412-32567512,32567603-32567870,32568236-32568265,
           32568361-32568572,32568650-32568731,32568804-32569555,
           32569640-32569811,32570412-32570498,32570578-32570895,
           32570982-32571107
          Length = 1103

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 233 RIVLFCKLLNIINVSXLRESISSTTLEKCFSIDSYMTTSIDFISCS 96
           R +   +L   I ++ L   +S     +CF    YM TSI FI C+
Sbjct: 422 RSMFSTELKTKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 467


>04_04_1311 -
           32559549-32559674,32559761-32560078,32560158-32560244,
           32560845-32561016,32561101-32561852,32561925-32562006,
           32562084-32562295,32562391-32562420,32562786-32563074,
           32563143-32563243,32563319-32563435,32563511-32563603,
           32563683-32563811,32563884-32564516,32564765-32564844,
           32565152-32565164
          Length = 1077

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 200 INVSXLRESISSTTLEKCFSIDSYMTTSIDFISCS 96
           I ++ L   +S     +CF    YM TSI FI C+
Sbjct: 407 IKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441


>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 176 SISSTTLEKC--FSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQXLNXAQK 30
           SI S T E    FS++  MT ++D+ S SS+     +    TK   N + K
Sbjct: 180 SIVSVTNESLPDFSLNGSMTATVDYNSSSSILSVKLWINDTTKPPYNLSDK 230


>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
          Length = 482

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 166 DEIDSLKXDTFMMLSNLQNNTIRTWDAVVKNGKXISXLDEKI 291
           +EI+ LK D   + S LQNNT++     +   K +  L+EK+
Sbjct: 170 EEIERLKSDNAALSSELQNNTLKK----LNMEKRMQALEEKL 207


>07_01_0002 - 10937-11893
          Length = 318

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -3

Query: 363 LSDK*RLXNVKQVVNYPVFC**HVNFFVEXGYXFAIFYNXVPRSNRVILQVAQHHKRVRF 184
           +SD   + ++K+ V  PV     +  FVE     AI  + V  S  + L    HH     
Sbjct: 86  MSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADDAHHINKHN 145

Query: 183 KRINFV 166
            R+ FV
Sbjct: 146 FRVPFV 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,174,051
Number of Sequences: 37544
Number of extensions: 114148
Number of successful extensions: 265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)