Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a06
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   1.5  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    28   2.6  
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 248 TASHVRIVLFCKLLNIINVSXLRESISSTTLEKCFSIDSYMTTSIDFISC 99
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
 Frame = -1

Query: 347 VYXTLSRXLTTPFFVNSTLIFS-SXLDIXLPFFTTASHVRIVLFCKLLNI--------IN 195
           +Y T S  LT    +N++ +F  S +   L         R  ++C LL+I        +N
Sbjct: 414 LYETASNMLTVDHLLNASAVFGISSIISRLTNIGVIPTQRADVWCTLLDINETKWRDYLN 473

Query: 194 VSXLRESISSTTLE----KCFSIDSYMTT 120
           +  L    S   LE    +C   DSYMTT
Sbjct: 474 LDVLASHSSDRQLEVDIPRCHQYDSYMTT 502


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 353 SSVYXTLSRXLTTPFFVNSTLIFSSXLDIXLPFFTTASHVRIVLFCKL 210
           S +Y  ++  +  P F+  TLIF S L + + FF + SH+  + F  L
Sbjct: 13  SKIYEVINE-IVYPIFLTITLIFHSVLLVFIIFF-SPSHLNFLKFLLL 58


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
            protein Y42A5A.1 protein.
          Length = 1045

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 70   VYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKXDTFMMLSNLQNNTIRTWDAV 249
            VY+  +N+  QE    L   +  M +H+    D I      T +  +N++ N+ R W  V
Sbjct: 873  VYSAAINDGTQEDFDFLYKKW--MIEHYMMEHDNIF-----TGLCTTNIRENSDRAWRQV 925

Query: 250  VKNG 261
            +KNG
Sbjct: 926  IKNG 929


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,773,074
Number of Sequences: 27780
Number of extensions: 122793
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)