Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27a04
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    29   0.46 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   1.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   9.9  
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    25   9.9  
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    25   9.9  
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    25   9.9  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   9.9  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 338 IYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLVYWEDKTLFIEQKFITLNDGFVR 517
           +YT  + V GH L  +S IRY   I I   +    K V +   T F  + F  LN     
Sbjct: 158 LYTEKRMVRGHGLTISSQIRYVYYIEILKQFPNYLKAVEFNTGTTFF-KSFKCLNIKKNS 216

Query: 518 AIVLSRQNL---LNVDAAALFK 574
           +++LS        N++  AL+K
Sbjct: 217 SLILSLHAFSKGRNINPVALWK 238


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 239 TTQDVDIFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDG---HALQGASSIRY 400
           TT+++++ LR       ++ L      F   T I   +KAV+G   H L   S IRY
Sbjct: 512 TTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGLPIHPLFKKSKIRY 568


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 313 IPFLRSDWYLYKYKSCGRSRSTRSLEYPLSKN 408
           I F+R  W+  K+K   R   TR  +  L K+
Sbjct: 97  ISFIRLYWFRRKFKDVVRQNRTRKFQRKLRKS 128


>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 582 GIPLNSAAASTLRRFCRDNTMALTKPSFR 496
           G  L    A   R+  RDN   +TKP+ R
Sbjct: 8   GKGLGKGGAKRHRKILRDNIQGITKPAIR 36


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 582 GIPLNSAAASTLRRFCRDNTMALTKPSFR 496
           G  L    A   R+  RDN   +TKP+ R
Sbjct: 8   GKGLGKGGAKRHRKILRDNIQGITKPAIR 36


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 582 GIPLNSAAASTLRRFCRDNTMALTKPSFR 496
           G  L    A   R+  RDN   +TKP+ R
Sbjct: 8   GKGLGKGGAKRHRKILRDNIQGITKPAIR 36


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 304 FCEIPFLRSDWYLY 345
           FCE+P LR  W  Y
Sbjct: 349 FCELPRLRKQWLFY 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,647
Number of Sequences: 5004
Number of extensions: 63302
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)