Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26p24
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 449 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFAC 574
           +MR     + +H  H  R   ++ N ++H R H  E   +AC
Sbjct: 28  HMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERP-YAC 68


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 575 VARRIAFFRRDQRPNASRWCWRSNY 649
           V  R+A++R D   N   W W   Y
Sbjct: 192 VEHRVAYWREDIGINLHHWHWHLVY 216


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 604 TSKKRNSSRDTREQNVF 554
           T++KRNS    REQN +
Sbjct: 33  TNRKRNSRSREREQNSY 49


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 604 TSKKRNSSRDTREQNVF 554
           T++KRNS    REQN +
Sbjct: 33  TNRKRNSRSREREQNSY 49


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 29   CRGPYL*RQQYGANARGYGAATNE 100
            C    L  + YG NARG    T E
Sbjct: 1888 CDRDQLVNRNYGVNARGKDGMTTE 1911


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 645 FDRQHHLDAFGRWSRRKNAIRRATHANK 562
           FD+Q  +  FG W+   + +  A + NK
Sbjct: 160 FDQQTCIMKFGSWTFNGDQVSLALYNNK 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,687
Number of Sequences: 438
Number of extensions: 4446
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)