Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26p23
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 134 5e-32
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 83 2e-16
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 0.94
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.2
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 1.2
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 1.2
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 1.2
Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical pr... 28 6.6
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 134 bits (324), Expect = 5e-32
Identities = 67/165 (40%), Positives = 102/165 (61%), Gaps = 8/165 (4%)
Frame = +1
Query: 178 IDMIAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDK----- 342
+DM+ ATS LQ+ A E+R + NW SY +SQMI + D++FI + + K+ D+
Sbjct: 12 VDMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAAN 71
Query: 343 NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFSGNVWQPFL 513
N + A+ NL+T ++KD ++Y+L L DD+L EDKSRV++F + VW +L
Sbjct: 72 NANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYL 131
Query: 514 NLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL 648
+L RQD F+ + + IIAKLAC+ M+ DL +Y S+LK+QL
Sbjct: 132 GILQRQDNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQL 176
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 83.0 bits (196), Expect = 2e-16
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Frame = +1
Query: 208 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLN 375
Q A ++R + NW + +++MI Q D+DFIV Q + + + F++
Sbjct: 15 QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVH 74
Query: 376 LLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQH 549
L++ ISKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD+++ H
Sbjct: 75 LMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVH 134
Query: 550 MTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL 648
+T I+ K+A + + +L + + LK+ +
Sbjct: 135 ITFSILTKMAVFGNIKLSGDELDYCMGSLKEAM 167
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 495 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 388
V FR+ Y H FI+ N ++ NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 562 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 392
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 391 *YASGG*ERLRHRHQDSCQADLFG 320
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical
protein F43D2.1 protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 21 PEQCRIVCFSKKTQILKLFSVLEHLIDNIFG 113
P++C+ VC + T +++S ++L+D++ G
Sbjct: 91 PKKCKDVCQAAVTHYPEIYSKYQNLVDDVMG 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,334
Number of Sequences: 27780
Number of extensions: 277927
Number of successful extensions: 815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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