Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26p17
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    30   0.35 
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    28   1.1  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   3.3  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   7.6  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   10.0 
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   10.0 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   10.0 

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 221 FNKDSQLMEDEKTLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPD 397
           F+  ++ +  ++ + +  +TSN       +     L  +N E   + LT P ++ P L +
Sbjct: 347 FSPIARPLTSQEAIVDMDITSNNINLSPVSHFSNGLDLQNLEEAPMNLTRPINANPHLTN 406

Query: 398 VMKSQETNGQEQMD 439
              +  TNG+E+MD
Sbjct: 407 HSPNDLTNGEEEMD 420


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 561 PLRSGSRVQNIKQFYFLFTIKYF 629
           PLRSGS+  NI Q    FT+K++
Sbjct: 430 PLRSGSKTWNIFQLVEQFTLKFY 452


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 415 LLRFHNIGQVGG*RIRGKFQCLKFTILLPQS*SNWC 308
           LL+  N+ ++GG  + GK +   FT+  P+   +WC
Sbjct: 39  LLQLKNL-KLGGSEVSGKKKDTSFTLKTPKGTKDWC 73


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +2

Query: 77  QNNIMDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKDSQLMEDEK 256
           +N  MDV    + K+L   T    T TVL+ + +    + + P      NK  QL+    
Sbjct: 114 ENFRMDVLETYKCKQLNHQTTHLPTNTVLKKRSLFNDAISIVP------NKKKQLVSAIS 167

Query: 257 TLAEF-GLTSN---TAKAHCPAPIGLALRK 334
           T ++  G +SN   T K    +P G  LRK
Sbjct: 168 TNSDSQGASSNIIPTPKYDSNSPAGHELRK 197


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 374 NTG*VPVPQIHHSPSSKLIQLVLDSEPLLC*RSGQIQPRSS 252
           N G  PV ++  S  ++++ L   S+P+L  R G +  R S
Sbjct: 141 NVGRYPVSKLSCSTKNQILALYTHSQPILYDRDGSLIVRFS 181


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 248 DEKTLAEF-GLTSNTAKAHCPAPIGL 322
           + K L E+   TSNT K H P PI +
Sbjct: 127 ETKILQEYITQTSNTVKKHAPPPIAM 152


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 434 SVPVHWSLEIS*HRASRGVKNTG*VPVPQIHHSPSSKLIQLVLDSEPLL 288
           SVPV+++   +  +A     N   +PV Q+ H P++ ++ L+   E L+
Sbjct: 169 SVPVYFT--DAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLI 215


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 496 SWCLYRLRPNHSLVFRLMLIHLFLSIGLLRFHNIGQVG 383
           +W    +   H+L F L+ +H++ S+ +  + ++GQ G
Sbjct: 483 NWTYGLVSLRHALGFGLIALHIYTSVSI--YEDLGQYG 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,107
Number of Sequences: 5004
Number of extensions: 60053
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)