Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26p17
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0392 - 33583375-33583554,33583646-33584126,33584211-33584452     31   0.84 
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    30   1.9  
07_03_1661 + 28441201-28441987,28442092-28442171,28442442-284425...    29   3.4  
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907     28   5.9  
04_04_0869 - 28883688-28884983                                         28   5.9  
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819...    28   7.8  
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    28   7.8  

>03_06_0392 - 33583375-33583554,33583646-33584126,33584211-33584452
          Length = 300

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 149 TTTVLELKKMIEGILKVSPPSQMLFNKDSQLMEDEKTLAEFGL 277
           TTTV ++K M+    +++   Q LF     L +D +TLA++G+
Sbjct: 21  TTTVAQVKGMVMARERIAVAMQRLFFAGRCLDDDHRTLADYGV 63


>03_01_0224 -
           1771582-1771727,1771855-1771980,1772489-1772517,
           1772689-1772747,1772816-1772929,1773030-1773238,
           1773347-1774087,1775678-1776238,1776295-1776419,
           1778187-1778317,1779020-1779178,1779471-1779728,
           1780140-1780164,1780531-1780592,1780944-1781003,
           1781112-1781219,1781703-1781838,1781880-1781929,
           1782024-1782096,1782209-1782345,1782441-1782527,
           1782624-1782721,1783259-1783369,1783685-1783769,
           1783880-1783969
          Length = 1259

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 170 KKMIEGILKVSPPSQMLFNKDSQLMEDEKTLAEFGL----TSNTAKAHCPAPIGLALRKE 337
           K ++     V  P Q L  K  ++++DE+TLA +G+    T +  +   P P   A    
Sbjct: 753 KAIVAESCDVPAPQQRLIYK-GRILKDEQTLASYGVETDHTIHMVRGAAPPPASTAPPAA 811

Query: 338 NGEFEALELTPYSSPP 385
           N    A+  T  S+ P
Sbjct: 812 NNVTPAINATTASNSP 827


>07_03_1661 +
           28441201-28441987,28442092-28442171,28442442-28442525,
           28443181-28443255,28443704-28444015
          Length = 445

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 107 IRRKKLTVFTDAKETTTVLELKKMIEGILKV 199
           +R++ LTV+ D K+T +   +  ++EG++K+
Sbjct: 319 LRKEPLTVYGDGKQTRSFQYVSDLVEGLMKL 349


>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
          Length = 794

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +2

Query: 236 QLMEDEKTLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE 415
           Q M  +  + E  LT   A  H P  IG +LRKEN   E+      +    L DV    E
Sbjct: 445 QNMLPDVKVEEMDLTKTDA--HVPEDIGPSLRKENAWIESGSDVGKNVSAVLDDVFSEPE 502

Query: 416 TNGQEQMD 439
            + + + D
Sbjct: 503 VSSEAKTD 510


>04_04_0869 - 28883688-28884983
          Length = 431

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 305 PAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQETNGQEQMDQH*TKNEA 463
           PAP   A  K+  + ++   +P + P D PD+  +    G+E  D+   KN A
Sbjct: 356 PAPSPKAAGKKKKKGKSPSHSPPAPPADTPDMSPADAPAGEEAADKAEKKNGA 408


>07_01_1111 +
           10279778-10280065,10280265-10280340,10280734-10281944,
           10283779-10284138
          Length = 644

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 100 KDIHYVILLRTISFMYKRKCYKAYEMKLSKTTT 2
           K+ H + L+RT+  ++K KC   Y  +LS + T
Sbjct: 424 KEEHKLFLVRTLIPLHKPKCIALYHQQLSYSIT 456


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +2

Query: 107 IRRKKLTVFTDAKETTTVLELKKMIEGILKV 199
           +R++ LTV+ D K+T +   +  ++EG++++
Sbjct: 313 LRKEPLTVYGDGKQTRSFQYVSDLVEGLMRL 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,941
Number of Sequences: 37544
Number of extensions: 362305
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)