Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26p17
         (675 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L42856-1|AAA75522.1|  118|Homo sapiens RNA polymerase II transcr...   134   4e-31
BC065000-1|AAH65000.1|  118|Homo sapiens transcription elongatio...   134   4e-31
BC013306-1|AAH13306.1|  118|Homo sapiens transcription elongatio...   134   4e-31
AC004493-1|AAC08452.1|   72|Homo sapiens elongin B protein.            75   3e-13
AB065679-1|BAC45260.1|  919|Homo sapiens seven transmembrane hel...    33   1.2  

>L42856-1|AAA75522.1|  118|Homo sapiens RNA polymerase II
           transcription factor SIII p18 subunit protein.
          Length = 118

 Score =  134 bits (323), Expect = 4e-31
 Identities = 66/110 (60%), Positives = 84/110 (76%)
 Frame = +2

Query: 89  MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKDSQLMEDEKTLAE 268
           MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK  P  Q L+ KD QL++D KTL E
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59

Query: 269 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 418
            G TS TA+   PA +GLA R ++  FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60  CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108


>BC065000-1|AAH65000.1|  118|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 2 (18kDa, elongin B)
           protein.
          Length = 118

 Score =  134 bits (323), Expect = 4e-31
 Identities = 66/110 (60%), Positives = 84/110 (76%)
 Frame = +2

Query: 89  MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKDSQLMEDEKTLAE 268
           MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK  P  Q L+ KD QL++D KTL E
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59

Query: 269 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 418
            G TS TA+   PA +GLA R ++  FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60  CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108


>BC013306-1|AAH13306.1|  118|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 2 (18kDa, elongin B)
           protein.
          Length = 118

 Score =  134 bits (323), Expect = 4e-31
 Identities = 66/110 (60%), Positives = 84/110 (76%)
 Frame = +2

Query: 89  MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKDSQLMEDEKTLAE 268
           MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK  P  Q L+ KD QL++D KTL E
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59

Query: 269 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 418
            G TS TA+   PA +GLA R ++  FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60  CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108


>AC004493-1|AAC08452.1|   72|Homo sapiens elongin B protein.
          Length = 72

 Score = 74.5 bits (175), Expect = 3e-13
 Identities = 35/63 (55%), Positives = 46/63 (73%)
 Frame = +2

Query: 230 DSQLMEDEKTLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKS 409
           D QL++D KTL E G TS TA+   PA +GLA R ++  FEAL + P+SSPP+LPDVMK 
Sbjct: 1   DDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKP 59

Query: 410 QET 418
           Q++
Sbjct: 60  QDS 62


>AB065679-1|BAC45260.1|  919|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 919

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -1

Query: 183 SIIFFNSNTVVVSFASVKTVSFFRLIIKKTSIMLFC 76
           S+ F++S+ +++SF S KT++ F   +   S++ FC
Sbjct: 713 SLHFWSSSCLLISFESQKTLNVFHFFVLHISVLFFC 748


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,488,522
Number of Sequences: 237096
Number of extensions: 2063910
Number of successful extensions: 3468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3454
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)