Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26p17
(675 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-2819|AAG22163.1| 118|Drosophila melanogaster CG4204-PA... 165 5e-41
AB007692-1|BAA24286.1| 118|Drosophila melanogaster Elongin B pr... 165 5e-41
AY070882-1|AAL48504.1| 518|Drosophila melanogaster LD16673p pro... 30 3.3
AY060442-1|AAL25481.1| 518|Drosophila melanogaster LD47433p pro... 30 3.3
AE013599-1652|AAF58414.3| 518|Drosophila melanogaster CG17724-P... 30 3.3
EF058010-1|ABL84945.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058008-1|ABL84943.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058007-1|ABL84942.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058006-1|ABL84941.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058005-1|ABL84940.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058004-1|ABL84939.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058003-1|ABL84938.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058002-1|ABL84937.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058001-1|ABL84936.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
EF058000-1|ABL84935.1| 1200|Drosophila melanogaster Nup133 protein. 29 4.4
BT003226-1|AAO24981.1| 1200|Drosophila melanogaster LP09464p pro... 29 4.4
AE014297-3210|AAF56042.2| 1200|Drosophila melanogaster CG6958-PA... 29 4.4
BT003589-1|AAO39592.1| 796|Drosophila melanogaster LD03662p pro... 29 5.8
AE014297-2554|AAF55575.2| 1784|Drosophila melanogaster CG31224-P... 29 5.8
>AE014297-2819|AAG22163.1| 118|Drosophila melanogaster CG4204-PA
protein.
Length = 118
Score = 165 bits (401), Expect = 5e-41
Identities = 76/117 (64%), Positives = 97/117 (82%), Gaps = 1/117 (0%)
Frame = +2
Query: 89 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKDSQLMEDEKTLAE 268
MDVFLMIRR+K T+FTDAKE TTV ELK+MIEGILKV P Q L+N+D+ +MED+ TL +
Sbjct: 1 MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDNDVMEDDSTLQD 60
Query: 269 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE-TNGQEQM 436
+G+T +TAKA PA +GL R E G+FE L++TPYS+PPDLP+VMK+QE +NGQEQ+
Sbjct: 61 YGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPDLPEVMKNQEASNGQEQV 117
>AB007692-1|BAA24286.1| 118|Drosophila melanogaster Elongin B
protein.
Length = 118
Score = 165 bits (401), Expect = 5e-41
Identities = 76/117 (64%), Positives = 97/117 (82%), Gaps = 1/117 (0%)
Frame = +2
Query: 89 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKDSQLMEDEKTLAE 268
MDVFLMIRR+K T+FTDAKE TTV ELK+MIEGILKV P Q L+N+D+ +MED+ TL +
Sbjct: 1 MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDNDVMEDDSTLQD 60
Query: 269 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE-TNGQEQM 436
+G+T +TAKA PA +GL R E G+FE L++TPYS+PPDLP+VMK+QE +NGQEQ+
Sbjct: 61 YGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPDLPEVMKNQEASNGQEQV 117
>AY070882-1|AAL48504.1| 518|Drosophila melanogaster LD16673p
protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.3
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 227 KDSQLMED--EKTLAEFGLTSNTAKA--HCPAPIGLALRKENGEFEALELTPYSSPPDLP 394
+D +L ED E +A GL+S+TA+ P G A+ ++GE TP SPP +
Sbjct: 258 EDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSGENYLAMPTPTPSPPGVV 317
Query: 395 DVMKS-QETNGQEQMD 439
+++ S E +G + D
Sbjct: 318 NLVSSGVEASGYIEND 333
>AY060442-1|AAL25481.1| 518|Drosophila melanogaster LD47433p
protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.3
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 227 KDSQLMED--EKTLAEFGLTSNTAKA--HCPAPIGLALRKENGEFEALELTPYSSPPDLP 394
+D +L ED E +A GL+S+TA+ P G A+ ++GE TP SPP +
Sbjct: 258 EDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSGENYLAMPTPTPSPPGVV 317
Query: 395 DVMKS-QETNGQEQMD 439
+++ S E +G + D
Sbjct: 318 NLVSSGVEASGYIEND 333
>AE013599-1652|AAF58414.3| 518|Drosophila melanogaster CG17724-PA,
isoform A protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.3
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 227 KDSQLMED--EKTLAEFGLTSNTAKA--HCPAPIGLALRKENGEFEALELTPYSSPPDLP 394
+D +L ED E +A GL+S+TA+ P G A+ ++GE TP SPP +
Sbjct: 258 EDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSGENYLAMPTPTPSPPGVV 317
Query: 395 DVMKS-QETNGQEQMD 439
+++ S E +G + D
Sbjct: 318 NLVSSGVEASGYIEND 333
>EF058010-1|ABL84945.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058008-1|ABL84943.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058007-1|ABL84942.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058006-1|ABL84941.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058005-1|ABL84940.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058004-1|ABL84939.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058003-1|ABL84938.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058002-1|ABL84937.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058001-1|ABL84936.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>EF058000-1|ABL84935.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>BT003226-1|AAO24981.1| 1200|Drosophila melanogaster LP09464p
protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>AE014297-3210|AAF56042.2| 1200|Drosophila melanogaster CG6958-PA
protein.
Length = 1200
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 NTAKAHCPAPIGLALRKENGEFEALELT-PYSSPPDLPDVMKSQETNGQE 430
+TAK+ P +G R+ G + ELT PYS D++ +T GQ+
Sbjct: 131 DTAKSGSPPRVGKLARRGGGLAQCRELTLPYSDLGHKSDLISVFQTEGQQ 180
>BT003589-1|AAO39592.1| 796|Drosophila melanogaster LD03662p
protein.
Length = 796
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 305 PAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQETN-GQEQMDQH 445
P I + KE+GEF +E Y SPP + + E + +E+ D+H
Sbjct: 318 PKHIVECVEKEDGEFSVIERI-YQSPPSVLHIHDDDEDDEDEEEEDEH 364
>AE014297-2554|AAF55575.2| 1784|Drosophila melanogaster CG31224-PA
protein.
Length = 1784
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 305 PAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQETN-GQEQMDQH 445
P I + KE+GEF +E Y SPP + + E + +E+ D+H
Sbjct: 492 PKHIVECVEKEDGEFSVIERI-YQSPPSVLHIHDDDEDDEDEEEEDEH 538
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,642,595
Number of Sequences: 53049
Number of extensions: 637513
Number of successful extensions: 1443
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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