Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26p17
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-13|CAA21548.1| 118|Caenorhabditis elegans Hypothetical... 72 3e-13
AF326942-1|AAG49392.1| 118|Caenorhabditis elegans RNA polymeras... 72 3e-13
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p... 28 5.3
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ... 28 5.3
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ... 28 5.3
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 27 9.2
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 27 9.2
>AL032627-13|CAA21548.1| 118|Caenorhabditis elegans Hypothetical
protein Y41C4A.10 protein.
Length = 118
Score = 72.1 bits (169), Expect = 3e-13
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Frame = +2
Query: 92 DVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKD-----SQLMEDEK 256
++F +RR + ++ DA+E+ +V+ELK M+ GI + L+ D SQL+ D
Sbjct: 5 ELFFEVRRNRSHIYLDAEESHSVMELKLMLAGITRDPVNHMELWKLDEDGNKSQLLHDTA 64
Query: 257 TLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE 415
TL++ G +S AKA CPA +G LR N E E L ++ S+ P +PD M+ ++
Sbjct: 65 TLSDAGFSSTNAKAQCPAALG--LRLTNAE-EHLTISDVSTAPPIPDTMRQEQ 114
>AF326942-1|AAG49392.1| 118|Caenorhabditis elegans RNA polymerase
II transcriptionfactor SIII p18 subunit protein.
Length = 118
Score = 72.1 bits (169), Expect = 3e-13
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Frame = +2
Query: 92 DVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKD-----SQLMEDEK 256
++F +RR + ++ DA+E+ +V+ELK M+ GI + L+ D SQL+ D
Sbjct: 5 ELFFEVRRNRSHIYLDAEESHSVMELKLMLAGITRDPVNHMELWKLDEDGNKSQLLHDTA 64
Query: 257 TLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE 415
TL++ G +S AKA CPA +G LR N E E L ++ S+ P +PD M+ ++
Sbjct: 65 TLSDAGFSSTNAKAQCPAALG--LRLTNAE-EHLTISDVSTAPPIPDTMRQEQ 114
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 101 LMIRRKKLTVFTDAKETTTVLELKKMIEGILKVSPPSQMLFNKDSQL-MEDEKTLAEFG- 274
LMI +K+ T+ D K + L +G LK+ PS+++ N+ ++ M D + F
Sbjct: 49 LMISKKQNTISADKKTAYEMRTLGGQHKGFLKIDLPSEIMNNQAHKVGMPDRYSTTLFAP 108
Query: 275 -LTSNTAKAH 301
+ N A+ H
Sbjct: 109 PVPENKAQIH 118
>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 506 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 366
Y T + S S++ + RFS + PS+P H H S K G
Sbjct: 10 YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56
>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 506 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 366
Y T + S S++ + RFS + PS+P H H S K G
Sbjct: 10 YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56
>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 506 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 366
Y T + S S++ + RFS + PS+P H H S K G
Sbjct: 10 YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56
>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 506 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 366
Y T + S S++ + RFS + PS+P H H S K G
Sbjct: 10 YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
R11A8.6 protein.
Length = 1141
Score = 27.5 bits (58), Expect = 9.2
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Frame = +2
Query: 158 VLELKKMI---EGILKVSPPSQML-FNKDSQLMEDEKTLAEFGLTS-NTAK---AHCPAP 313
V++L +++ EG+ P +M+ N+DSQ +ED K+L + L N K +
Sbjct: 821 VIDLVRLVRDREGLAVKYPLKEMIVINRDSQFLEDVKSLESYILLELNVRKLTVSQDKQK 880
Query: 314 IGLALRKENGEFEALELTPYSSPPDLPDVMKSQETNGQ 427
G+ L+ E F+ L + D +K+Q T +
Sbjct: 881 YGITLKAE-PNFKILGARLKGEQKKVADYLKNQITESE 917
>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 504 ITILYI*KKTSSGSEHLARPLRSGSRVQNIKQFYFLFTIKYF 629
+++ + K + HL++ LR SR+ + QF F K+F
Sbjct: 891 VSLFQVFSKVNEHFTHLSKDLRKSSRLYELYQFGFHLLKKFF 932
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 504 ITILYI*KKTSSGSEHLARPLRSGSRVQNIKQFYFLFTIKYF 629
+++ + K + HL++ LR SR+ + QF F K+F
Sbjct: 891 VSLFQVFSKVNEHFTHLSKDLRKSSRLYELYQFGFHLLKKFF 932
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,533
Number of Sequences: 27780
Number of extensions: 334642
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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