Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26p17
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.16 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 323 ALRKENGEFEALELTPYSSPPDLPDVMKSQETNGQE 430
           A R++N E EA +      PP+LP+  KS   NG E
Sbjct: 136 AAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVE 171


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 311 VLDSEPLLC*RSGQIQPRSSHL 246
           +++ E LLC R  +IQ   SHL
Sbjct: 18  IVELEALLCRRDAEIQELRSHL 39


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 149 TTTVLELKKMIEGILKVSPPSQMLFNKDSQ 238
           T TVL  K  I G   +SP S+ L   D Q
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ 761


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,302
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)