Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26p09
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 31 0.84
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 31 1.1
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 30 1.5
07_03_0190 + 14893243-14893582,14893684-14893808 29 2.6
09_02_0195 + 5643549-5645090 29 3.4
02_03_0038 - 14220885-14221000,14221120-14221198,14221538-142216... 29 3.4
08_02_0697 + 20144063-20144341,20144755-20145366 29 4.5
03_02_0855 + 11809135-11809348,11809425-11809501,11809625-118096... 29 4.5
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 28 5.9
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 307 SSRCTSRSKPPATDI*CSLKSLILASVIQFTKLWS-AVEGTSSPNYAATCDAMPRAPSPH 483
SS T+ S PP++ L+SL++A+ + S A G+S +A+ A +PSP
Sbjct: 17 SSSPTAASSPPSSSW-IHLRSLLVAAASSSSSASSSAAAGSSVAMVSASAPAASSSPSPS 75
Query: 484 PKYCPL*NSEASTSK 528
P P +S S K
Sbjct: 76 PAPAPAPSSPHSDRK 90
>03_05_0124 +
21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 240 SYETFYRVDANEMRSINVDPHSVFEMHIAIQAASNGHIVLSEIPNPGVSDPVYEIVVGGG 419
SYE R+D M+S+N S+ + + + ++ + ++ L +P G ++++V
Sbjct: 472 SYEDILRIDTQHMKSMNEASGSLRYLSLVVSSSDHANLDLRTLPVSG-GIRIFQVVNSMD 530
Query: 420 GNK--FTELRRNLRR 458
N+ F+ +N RR
Sbjct: 531 DNRRYFSSFFKNNRR 545
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 297 PHSVFEM-HIAIQAASNGHIVLSEIPNPGVSDPVYEIVVGGGGNKFTELRRNLRR 458
PH+ A+ A + H + PNP DP+ ++ T LRRNLRR
Sbjct: 19 PHAAMSWPSAALLFAVDRHRLAEHYPNPTALDPLARGPTSPPPHRTTRLRRNLRR 73
>07_03_0190 + 14893243-14893582,14893684-14893808
Length = 154
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 286 STLTLIQSSRCTSRSKPPATDI 351
ST + +++RCTSRS+PP D+
Sbjct: 82 STTSTTRTARCTSRSEPPRPDL 103
>09_02_0195 + 5643549-5645090
Length = 513
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 395 LRNCGRRWREQVHRTTPQPATQCQELRHHTPNIVPYRTQRLLHQ 526
L + G Q H T P PA L H P+ P+R R HQ
Sbjct: 71 LASSGEGSSRQAHTTAPPPAGLIGPLMLHAPSRNPHRPVRDWHQ 114
>02_03_0038 -
14220885-14221000,14221120-14221198,14221538-14221641,
14221869-14222049,14224747-14224836,14224906-14225025,
14225343-14225528,14225678-14225839,14226958-14227002
Length = 360
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 398 VNWITDARIRDFREHYMSVAGGLDRDVHLED 306
VN++ + R + F Y+++ GGL D H D
Sbjct: 27 VNYVDEIRAQGFELEYLNIGGGLGIDYHHTD 57
>08_02_0697 + 20144063-20144341,20144755-20145366
Length = 296
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 262 WTRTK*EA-STLTLIQSSRCTSRSKPPATDI 351
W T +A ST +++RCTSRS PP D+
Sbjct: 150 WRDTLVDAPSTTPTTRAARCTSRSAPPRPDL 180
>03_02_0855 +
11809135-11809348,11809425-11809501,11809625-11809682,
11809753-11809840,11809910-11809979,11810171-11810728
Length = 354
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 560 STEFYQAIFRYFDVEASEFYRGQYLGCGDGAL 465
STE Q F F++E+S+ +G + GDG++
Sbjct: 221 STECLQHAFSGFEIESSQMLQGHTMHLGDGSV 252
>09_06_0205 -
21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 263 HPVESFVAVTVSTDMLFTAHRIFVTISEIIRSNCTHTRE*PDYEHSPFH 117
H VE FV +S +F AH + + +SE+ H + + P H
Sbjct: 829 HAVEHFVPRVISLCTIFYAHILSLCVSELQHGPFEHDDDVLSISYGPLH 877
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,065
Number of Sequences: 37544
Number of extensions: 375059
Number of successful extensions: 1101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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