Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26p09
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81029-1|CAB02697.1|  465|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z77661-3|CAB01187.2|  264|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z81029-1|CAB02697.1|  465|Caenorhabditis elegans Hypothetical
           protein C01A2.1 protein.
          Length = 465

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 419 REQVHRTTPQPATQCQELRHH 481
           RE  H+ TP+P T C+ + HH
Sbjct: 429 REGRHQCTPKPCTYCKRINHH 449


>Z77661-3|CAB01187.2|  264|Caenorhabditis elegans Hypothetical
           protein F40G12.4 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 168 RTDNFTYSYKDAMRCKEHICRHGYSYETFYRVDA 269
           R D F Y Y++ +     I  HG   +T+YR++A
Sbjct: 88  RLDVFNYYYEELVDALSFIPAHGGCSDTYYRLNA 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,986
Number of Sequences: 27780
Number of extensions: 326010
Number of successful extensions: 877
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)