Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26p06
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    30   0.25 
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    29   0.58 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   1.3  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    28   1.3  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   3.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   4.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   4.1  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   4.1  
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    26   5.4  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   7.1  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   7.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   7.1  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   9.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   9.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.4  

>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +3

Query: 12  FFANHCPFFKKFIKNTPNIHHHLHTIKRPVYVPGDSTINRIVTCTGTTILSSRNMLYDYP 191
           F+A  C + KK +     +  +LH++     V  D+  NR V C+   +     +   YP
Sbjct: 55  FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAV-CSQYQVQGFPTIKLVYP 113

Query: 192 AVRRDETVVDDYHGTK-IKDPYRWLEDPDSNETK 290
           + +       DY+G +  K   +++ D   ++ K
Sbjct: 114 SSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVK 147


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 105 VPGDSTINRIVTCTGTTILSSRNMLYDYPAVRRDET--VVDDYHGTKIKDPYRWLEDPDS 278
           +P  +T +R    +     +S   +YD PA + + T  V+D++  T+I D     E+ DS
Sbjct: 3   IPDSTTDSRHSLSSAALSSASFENIYD-PARKNESTNDVIDNHTDTEIDDHDNDHENLDS 61

Query: 279 NETKEFVEAQNK 314
           N   E  EA N+
Sbjct: 62  NNNNENNEAFNE 73


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 616 SEPLAESPYAKVDPSSVNLV---PESATVPSSDRVF 518
           S PL +SP + V   S+N+V   P SA VP+S+  F
Sbjct: 383 SSPLIQSPGSYVSMPSINMVSSLPISAPVPNSNSQF 418


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = +3

Query: 60  PNIHHHLHTIKRPVYVPGDSTI----NRIVTCTGTTILSSRNMLY--DYPAVRRDETVVD 221
           P IH H+  +KR + VPG   +    N ++   G T        +  D+   R ++ V +
Sbjct: 351 PPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHATDFDPKRWNDRVNE 410

Query: 222 DYHGTKIKDPY 254
           D +  +I   Y
Sbjct: 411 DENAEQIDYGY 421


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 400 HVPSGRAADTSSSRTPVCRTKMRCTCKMVSTANLASSWTRTL-CPKTARWR 549
           H P+G  +D   + T       RC C +V + + AS     + C + + W+
Sbjct: 28  HTPNGSVSDNEENETSSTGEVTRCVCGIVESDDEASDGGLYIQCDQCSVWQ 78


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 111 GDSTINRIVTCTGTTILSSRNMLYDYPAVRRDE--TVVDDYHGTKIKD 248
           GD TIN   TC   T    R+MLY    V R+    + D+ H  + K+
Sbjct: 273 GDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE 320


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = +3

Query: 231 GTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINERLTELWNYPKYSCPF 410
           G  + D    + +PDS E     +    + R  L   P+Q +    LTELWN   +  P 
Sbjct: 436 GYCVLDEGHKIRNPDS-EISISCKQIRTVNRIILSGTPIQNN----LTELWNLFDFVFPG 490

Query: 411 RKGSRYFFFKNTGLQNQNALYVQDG 485
           R G+   F      QNQ AL +  G
Sbjct: 491 RLGTLPVF------QNQFALPINIG 509


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 252 YRWLEDPDSNETKEFVEAQNKITRPYLDA 338
           ++ LE    N  KE+++    I  PY DA
Sbjct: 56  FKQLESTSKNNAKEYMKLSKVIVHPYKDA 84


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 525 LSEDGTVALSGTKFTE-DGSTLAYGLSASGSDW 620
           +  DGT  L G  F+   GST AYG+  SG  W
Sbjct: 175 IDSDGT-RLKGDLFSVGSGSTFAYGVLDSGYRW 206


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 204 DETVVDDYHGTKIKDPY---RWLEDPDSNETKEFVE 302
           D+  +D Y      DP    +WLE+P++ E KE +E
Sbjct: 376 DDRYIDVYAHPIGADPVLVDKWLENPETLEVKEVLE 411


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 565 SPKTDPPWRTDFLPAALIG*LYISKTL 645
           +PK+   W T   P++L+G   +SK L
Sbjct: 303 TPKSQDNWTTQVTPSSLLGVSEVSKVL 329


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 168 RNMLYD-YPAVRRDETVVDDYHGTKIKDPYRW 260
           RN L + Y A++ +E +V + H T++   Y W
Sbjct: 717 RNFLSEIYKAIKENEIIVAEEHDTELSFLYIW 748


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  LHTIKRPVYVPGDSTINRIVTCTGTTI 158
           + T+K P +   +   NR+V C G T+
Sbjct: 829 VQTVKVPTFPSDNCETNRVVICWGATL 855


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 385 FHSSVSLSLIDFCTGHASKYGRVILF*ASTNSLVSFESGSSSQ 257
           +HS+++ S   F  G +SK   +    A+ +  VSF   S+S+
Sbjct: 158 YHSNLATSSNPFSDGSSSKSASLTASSAAASPTVSFSPASTSE 200


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 186 YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKE 293
           YPA   + T VDD +  + KD      D D N++ E
Sbjct: 21  YPAENGEGTNVDDNNNEEEKDGIPLDNDNDENDSSE 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,892
Number of Sequences: 5004
Number of extensions: 58817
Number of successful extensions: 223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)