Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o21
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    27   2.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   6.0  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    25   6.0  

>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 157 YRTDRDLTKLSTQQKKRNLLSISGVVSRCMSSTSS*KITY 276
           + T +DLT+L  Q  KRN+L +  +V   M+      I Y
Sbjct: 110 FGTKQDLTELVDQLHKRNMLCMIDIVVNHMAHAGDSPIDY 149


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 48  QKNPKHTSDWRDAARL 1
           + NPKH S W  AARL
Sbjct: 272 ETNPKHASGWVAAARL 287


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 328 FKLCIYLNLNYGGVNAPCM 272
           +K C+Y  +N  G+NA  M
Sbjct: 181 YKACLYAGINISGINAEVM 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,765
Number of Sequences: 5004
Number of extensions: 37265
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)