Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o21
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0469 - 3552409-3553368                                           28   6.1  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    28   6.1  
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558...    27   8.0  
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551...    27   8.0  

>07_01_0469 - 3552409-3553368
          Length = 319

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 433 VKMPSESGSAWSPPASTSERRLSNSSDGSACSGYSKT 543
           V++PS     W P   +  R LS+SS   +  G  +T
Sbjct: 252 VRVPSSGNGGWLPATPSGSRDLSSSSSSGSEPGSGET 288


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 367 DTTEKRNVTALSKFKLCIYLNLNYGGVNAPCM*SFN*RSMTCNERQRRRCLEDY 206
           D      V  LSK   C +  L+   V+  CM SF+ R +  NE++   C  +Y
Sbjct: 841 DLKTNAKVFQLSKCTTCTF-TLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEY 893


>06_03_0383 -
           20154045-20154712,20154969-20155122,20155780-20155896,
           20157395-20157466
          Length = 336

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 479 EAGGDHADPLSDGILTHIIPQHITISSSARNTALALH*HYREA 351
           E GGD   P S G+   ++P H+   S A +       H+R +
Sbjct: 192 EGGGDQ-QPWSPGVPDPVVPNHLETGSGAHHLEAITGDHHRSS 233


>02_05_1269 +
           35352825-35352888,35353645-35353968,35355062-35355183,
           35355361-35355482,35355651-35355755,35356402-35356765,
           35357181-35357321,35357619-35359109
          Length = 910

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 391 RADELIVMCCGIM*VKMPSESGSAWSPPASTSE 489
           R  EL+   CG++   M +  G +WS  +S+S+
Sbjct: 787 RPGELLEEACGVLEAAMSAAPGRSWSSVSSSSD 819


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,270
Number of Sequences: 37544
Number of extensions: 247009
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)